id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1320 Can't save ChimeraX session hyokeun.cha@… Eric Pettersen "{{{ Hello, I tried to save my ChimeraX session and got an error. Any way to get around this? Thank you, Michael Session file format is not finalized, and thus might not be restorable in other versions of ChimeraX. Error in saving session for ""CustomizedInstanceManager"": Traceback (most recent call last): File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 253, in process data = sm.take_snapshot(obj, session, self.state_flags) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/attr_registration.py"", line 159, in take_snapshot return { 'instances': [inst for inst in all_python_instances() File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/attr_registration.py"", line 160, in if inst.has_custom_attrs and getattr(inst, 'session', None) == session] } File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py"", line 803, in has_custom_attrs return has_custom_attrs(Residue, self) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py"", line 80, in has_custom_attrs for attr_name, attr_info in klass._attr_registration.reg_attr_info.items(): AttributeError: type object 'Residue' has no attribute '_attr_registration' Unable to save ""CustomizedInstanceManager"". Session might not restore properly. Traceback (most recent call last): File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/ui/gui.py"", line 703, in save_action.triggered.connect(lambda arg, s=self, sess=session: s.file_save_cb(sess)) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/ui/gui.py"", line 490, in file_save_cb self.save_dialog.display(self, session) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/ui/save_dialog.py"", line 141, in display fmt.save(session, filename) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/ui/save_dialog.py"", line 40, in save return self._save(session, filename) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/ui/save_dialog.py"", line 93, in _session_save run(session, ""save session %s"" % quote_if_necessary(filename)) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2622, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 896, in save_session save(session, filename, **kw) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/save.py"", line 63, in save fmt.export(session, filename, fmt.nicknames[0], **kw) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/io.py"", line 198, in export result = self.export_func(session, path, **kw) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 715, in save session.save(output, version=version) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 488, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 232, in discovery self.processed[key] = self.process(obj) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 263, in process return copy_state(data, convert=self._add_obj) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/state.py"", line 172, in copy_state return _copy(data) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/state.py"", line 159, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/state.py"", line 159, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/state.py"", line 159, in _copy items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/state.py"", line 159, in items = [(_copy(k), _copy(v)) for k, v in data.items()] File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/state.py"", line 170, in _copy return convert(data) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 238, in _add_obj uid = _UniqueName.from_obj(self.session, obj) File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 128, in from_obj obj_cls.__module__, obj_cls.__name__)) RuntimeError: No bundle information for chimerax.atomic.pbgroup.PseudobondGroup RuntimeError: No bundle information for chimerax.atomic.pbgroup.PseudobondGroup File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/session.py"", line 128, in from_obj obj_cls.__module__, obj_cls.__name__)) }}} " defect closed normal Core can't reproduce all ChimeraX