id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1318 Apparently bogus help viewer error chimerax-bug-report@… Greg Couch "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-34-generic-x86_64-with-debian-buster-sid ChimeraX Version: 0.7 (2018-08-07) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.7 (2018-08-07) OpenGL version: 3.3.0 NVIDIA 390.48 OpenGL renderer: Quadro 2000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation How to cite UCSF ChimeraX toolshed show ""Blast Protein"" toolshed show ""Basic Actions"" help help:quickstart open 2bbv Summary of feedback from opening 2bbv fetched from pdb --- notes | Fetching compressed mmCIF 2bbv from http://files.rcsb.org/download/2bbv.cif Fetching CCD U from http://ligand-expo.rcsb.org/reports/U/U/U.cif Fetching CCD C from http://ligand-expo.rcsb.org/reports/C/C/C.cif Fetching CCD A from http://ligand-expo.rcsb.org/reports/A/A/A.cif Fetching CCD LEU from http://ligand-expo.rcsb.org/reports/L/LEU/LEU.cif Fetching CCD THR from http://ligand-expo.rcsb.org/reports/T/THR/THR.cif Fetching CCD ARG from http://ligand-expo.rcsb.org/reports/A/ARG/ARG.cif Fetching CCD SER from http://ligand-expo.rcsb.org/reports/S/SER/SER.cif Fetching CCD GLN from http://ligand-expo.rcsb.org/reports/G/GLN/GLN.cif Fetching CCD PRO from http://ligand-expo.rcsb.org/reports/P/PRO/PRO.cif Fetching CCD GLY from http://ligand-expo.rcsb.org/reports/G/GLY/GLY.cif Fetching CCD ALA from http://ligand-expo.rcsb.org/reports/A/ALA/ALA.cif Fetching CCD PHE from http://ligand-expo.rcsb.org/reports/P/PHE/PHE.cif Fetching CCD LYS from http://ligand-expo.rcsb.org/reports/L/LYS/LYS.cif Fetching CCD CYS from http://ligand-expo.rcsb.org/reports/C/CYS/CYS.cif Fetching CCD ASP from http://ligand-expo.rcsb.org/reports/A/ASP/ASP.cif Fetching CCD ASN from http://ligand-expo.rcsb.org/reports/A/ASN/ASN.cif Fetching CCD ILE from http://ligand-expo.rcsb.org/reports/I/ILE/ILE.cif Fetching CCD GLU from http://ligand-expo.rcsb.org/reports/G/GLU/GLU.cif Fetching CCD VAL from http://ligand-expo.rcsb.org/reports/V/VAL/VAL.cif Fetching CCD TYR from http://ligand-expo.rcsb.org/reports/T/TYR/TYR.cif Fetching CCD TRP from http://ligand-expo.rcsb.org/reports/T/TRP/TRP.cif Fetching CCD MET from http://ligand-expo.rcsb.org/reports/M/MET/MET.cif Fetching CCD HIS from http://ligand-expo.rcsb.org/reports/H/HIS/HIS.cif Fetching CCD CA from http://ligand-expo.rcsb.org/reports/C/CA/CA.cif Fetching CCD HOH from http://ligand-expo.rcsb.org/reports/H/HOH/HOH.cif Used PDBx fixed column width tables to speed up reading mmCIF file Used PDBx keywords to speed up reading mmCIF file Chain information for 2bbv #1 --- Chain | Description A B C | protein (black beetle virus capsid protein) D E F | protein (black beetle virus capsid protein) N | RNA (5'-R(*up*cp*up*up*ap*up*ap*up*cp*U)-3') 2bbv mmCIF Assemblies | 1| complete icosahedral assembly | 2| icosahedral asymmetric unit | 3| icosahedral pentamer | 4| icosahedral 23 hexamer | 5| icosahedral asymmetric unit, std point frame | 6| crystal asymmetric unit, crystal frame 2bbv citation: Wery, J.P., Reddy, V.S., Hosur, M.V., Johnson, J.E. (1994). The refined three-dimensional structure of an insect virus at 2.8 A resolution. J.Mol.Biol., 235, 565-586. PMID: 8289282. DOI: 10.1006/jmbi.1994.1014 Opened mmCIF data containing 7817 atoms and 7813 bonds lighting full didn't expected commands hrefs to be to tools/sequenceviewer.html on line 239 QXcbConnection: XCB error: 3 (BadWindow), sequence: 63008, resource id: 50332189, major code: 40 (TranslateCoords), minor code: 0 open /home/lab311/Downloads/pdb4wjg.ent Unrecognized file suffix '.ent' Unrecognized file suffix '.ent' OpenGL version: 3.3.0 NVIDIA 390.48 OpenGL renderer: Quadro 2000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal 1.0 Documentation fixed all ChimeraX