id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1191	sym biomt: typos in import statement	David.Bhella@…	Eric Pettersen	"{{{
Hi

I am very much enjoying ChimeraX now that you have implemented a wide range of surface colour options. One issue with Chimera rendering is that rendering whole virus capsids as solvent excluded surfaces always looks very flat, so I am keen to use the ambient occlusion rendering capability of ChimeraX. I just installed the daily build yesterday (0.7), I get an error when I try to run a sim command to apply the bioMT operations from my model.

sym #1 biomt

gave this error:

Traceback (most recent call last):
  File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py"", line 205, in execute
    cmd.run(cmd_text)
  File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2526, in run
    prev_annos = self._process_positional_arguments()
  File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2311, in _process_positional_arguments
    value, text = self._parse_arg(anno, text, session, False)
  File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2174, in _parse_arg
    value, replacement, rest = annotation.parse(text, session)
  File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/args.py"", line 136, in parse
    from chimerac.core.commmands import next_token
ModuleNotFoundError: No module named 'chimerac'

ModuleNotFoundError: No module named 'chimerac'

File ""/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/atomic/args.py"", line 136, in parse
from chimerac.core.commmands import next_token

See log for complete Python traceback.

If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.





Dr David Bhella
Director - Scottish Centre for Macromolecular Imaging

MRC-University of Glasgow Centre for Virus Research
Sir Michael Stoker Building
Garscube Campus
464 Bearsden Road
Glasgow G61 1QH
Scotland (UK)

Telephone:  0141-330-3685
Skype: d.bhella

Virus structure group on Facebook: https://www.facebook.com/CVRstructure
Molecular Machines - Images from Virus Research: http://www.molecularmachines.org.uk

CVR website: http://www.cvr.ac.uk
CVR on Facebook: https://www.facebook.com/centreforvirusresearch



[University of Glasgow: The Times Scottish University of the Year 2018]


}}}
"	defect	closed	normal		Higher-Order Structure		fixed		Tom Goddard				all	ChimeraX