id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1118	deleting residues from a chain leads to erroneous PDB	Tristan Croll	Eric Pettersen	If I open a PDB file, select some set of residues in the middle of a chain, then `delete selAtoms` and `save xxx.pdb #1`, the PDB file will have a TER line at the new break. This causes an error if the file is used in phenix.refine. Additionally, secondary structure annotations in the PDB header are not updated - if any of the deleted atoms come from an assigned secondary structure element, then this too leads to an error in phenix.refine if secondary structure restraints are enabled.	defect	closed	moderate		Input/Output		fixed		Elaine Meng				all	ChimeraX