id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 10428 self._positions is None olibclarke@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-14.2.1-arm64-arm-64bit ChimeraX Version: 1.8.dev202401040148 (2024-01-04 01:48:54 UTC) Description Holding down arrow key while using sequential model display controls Log: > camera ortho > cofr centerOfView > mousemode alt rightMode ""contour level"" > mousemode rightMode clip > mousemode alt leftMode ""translate selected models"" > mousemode shift leftMode ""rotate selected models"" > mousemode alt control leftMode ""pick blobs"" > alias cofron cofr centerofview showpivot true > alias cofroff cofr centerofview showpivot false > alias symclip cofr centerofview; clip near -$1 far $1 position cofr > alias cootmode set bgColor black; surface cap false; surface style solid; > lighting flat; graphics silhouettes false; style stick; ~rib; color > ##num_residues gold; color byhet ; disp; ~disp @H*; style ions ball; style > solvent ball; size ballscale 0.2; size stickradius 0.07; transparency 70; > cofr centerofview; clip near -10 far 10 position cofr; color ##~num_residues > cornflower blue > alias cootmode_mesh surface cap false; surface style mesh; lighting flat; > graphics silhouettes false; style stick; ~rib; color ##num_residues gold; > color byhet ; disp; ~disp @H*; style solvent ball; style ions ball; size > ballscale 0.2; size stickradius 0.07; cofr centerofview; clip near -10 far > 10 position cofr; color ##~num_residues #3d60ffff; transparency 50 > alias project_map set bgColor black; lighting depthcue false; volume $1 > style image sdlevel 0,0 color white sdlevel 100,0.15 color white > projectionmode 3d maximumIntensityProjection false dimTransparentVoxels > false btcorrection true showOutlineBox false linearinterpolation true > alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; > disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp > ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1 > alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp > @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius > 0.1 > alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000; > marker #10000 position cofr; sel ~sel; surface zone ##~num_residues > nearAtoms sel distance 15; close #10000 > alias map_unsphere surface unzone ##~num_residues > alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5; > lighting soft > alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker > #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel > distance 0; close #10000 > alias showmaps surface unzone ##~num_residues > alias caps_off surface cap false > alias caps_on surface cap true > alias open_vseries ""open browse vseries true"" > alias selbetween ks ri > alias helix setattr $1 res is_helix true > alias strand setattr $1 res is_strand true > alias coil setattr $1 res is_strand false; setattr $1 res is_helix false > alias rock_movie cofr showpivot false; movie record; rock y 30; wait 136; > movie encode ~/Desktop/rock_movie.mp4; stop > buttonpanel Shortcuts rows 3 columns 4 > buttonpanel Shortcuts add Vol_Viewer command ""tool show 'Volume Viewer'"" > buttonpanel Shortcuts add Model_Panel command ""tool show Models"" > buttonpanel Shortcuts add Log command ""tool show Log"" > buttonpanel Shortcuts add default_disp command default_mol_display > buttonpanel Shortcuts add map_sphere command map_sphere_15 > buttonpanel Shortcuts add map_unsphere command map_unsphere > buttonpanel Shortcuts add cofron command cofron > buttonpanel Shortcuts add cofroff command cofroff > buttonpanel Shortcuts add cootmode command cootmode > buttonpanel Shortcuts add mark_cofr command ""marker #20000 position cofr"" > buttonpanel Shortcuts add hidemaps command hidemaps > buttonpanel Shortcuts add showmaps command showmaps > volume defaultvalues limitVoxelCount false voxelLimitForPlane > 1000000000000000 voxelLimitForOpen 1000000000000000 saveSettings true Saved volume settings UCSF ChimeraX version: 1.8.dev202401040148 (2024-01-04) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > tool show Models > tool show Log > tool show Models > tool show Log > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_00_00358_volume.mrc Opened J5055_class_00_00358_volume.mrc as #1, grid size 72,72,72, pixel 5.19, shown at level 2.31, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_01_00358_volume.mrc Opened J5055_class_01_00358_volume.mrc as #2, grid size 72,72,72, pixel 5.19, shown at level 2.27, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_02_00358_volume.mrc Opened J5055_class_02_00358_volume.mrc as #3, grid size 72,72,72, pixel 5.19, shown at level 2.26, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_03_00358_volume.mrc Opened J5055_class_03_00358_volume.mrc as #4, grid size 72,72,72, pixel 5.19, shown at level 2.32, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_04_00358_volume.mrc Opened J5055_class_04_00358_volume.mrc as #5, grid size 72,72,72, pixel 5.19, shown at level 2.16, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_05_00358_volume.mrc Opened J5055_class_05_00358_volume.mrc as #6, grid size 72,72,72, pixel 5.19, shown at level 2.27, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_06_00358_volume.mrc Opened J5055_class_06_00358_volume.mrc as #7, grid size 72,72,72, pixel 5.19, shown at level 2.22, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_07_00358_volume.mrc Opened J5055_class_07_00358_volume.mrc as #8, grid size 72,72,72, pixel 5.19, shown at level 2.29, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_08_00358_volume.mrc Opened J5055_class_08_00358_volume.mrc as #9, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_09_00358_volume.mrc Opened J5055_class_09_00358_volume.mrc as #10, grid size 72,72,72, pixel 5.19, shown at level 2.2, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_10_00358_volume.mrc Opened J5055_class_10_00358_volume.mrc as #11, grid size 72,72,72, pixel 5.19, shown at level 2.18, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_11_00358_volume.mrc Opened J5055_class_11_00358_volume.mrc as #12, grid size 72,72,72, pixel 5.19, shown at level 2.23, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_12_00358_volume.mrc Opened J5055_class_12_00358_volume.mrc as #13, grid size 72,72,72, pixel 5.19, shown at level 2.16, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_13_00358_volume.mrc Opened J5055_class_13_00358_volume.mrc as #14, grid size 72,72,72, pixel 5.19, shown at level 2.21, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_14_00358_volume.mrc Opened J5055_class_14_00358_volume.mrc as #15, grid size 72,72,72, pixel 5.19, shown at level 2.18, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_15_00358_volume.mrc Opened J5055_class_15_00358_volume.mrc as #16, grid size 72,72,72, pixel 5.19, shown at level 2.33, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_16_00358_volume.mrc Opened J5055_class_16_00358_volume.mrc as #17, grid size 72,72,72, pixel 5.19, shown at level 2.37, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_17_00358_volume.mrc Opened J5055_class_17_00358_volume.mrc as #18, grid size 72,72,72, pixel 5.19, shown at level 2.25, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_18_00358_volume.mrc Opened J5055_class_18_00358_volume.mrc as #19, grid size 72,72,72, pixel 5.19, shown at level 2.18, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_19_00358_volume.mrc Opened J5055_class_19_00358_volume.mrc as #20, grid size 72,72,72, pixel 5.19, shown at level 2.19, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_20_00358_volume.mrc Opened J5055_class_20_00358_volume.mrc as #21, grid size 72,72,72, pixel 5.19, shown at level 2.22, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_21_00358_volume.mrc Opened J5055_class_21_00358_volume.mrc as #22, grid size 72,72,72, pixel 5.19, shown at level 2.19, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_22_00358_volume.mrc Opened J5055_class_22_00358_volume.mrc as #23, grid size 72,72,72, pixel 5.19, shown at level 2.2, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_23_00358_volume.mrc Opened J5055_class_23_00358_volume.mrc as #24, grid size 72,72,72, pixel 5.19, shown at level 2.33, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_24_00358_volume.mrc Opened J5055_class_24_00358_volume.mrc as #25, grid size 72,72,72, pixel 5.19, shown at level 2.28, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_25_00358_volume.mrc Opened J5055_class_25_00358_volume.mrc as #26, grid size 72,72,72, pixel 5.19, shown at level 2.31, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_26_00358_volume.mrc Opened J5055_class_26_00358_volume.mrc as #27, grid size 72,72,72, pixel 5.19, shown at level 2.19, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_27_00358_volume.mrc Opened J5055_class_27_00358_volume.mrc as #28, grid size 72,72,72, pixel 5.19, shown at level 2.21, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_28_00358_volume.mrc Opened J5055_class_28_00358_volume.mrc as #29, grid size 72,72,72, pixel 5.19, shown at level 2.25, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_29_00358_volume.mrc Opened J5055_class_29_00358_volume.mrc as #30, grid size 72,72,72, pixel 5.19, shown at level 2.2, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_30_00358_volume.mrc Opened J5055_class_30_00358_volume.mrc as #31, grid size 72,72,72, pixel 5.19, shown at level 2.34, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_31_00358_volume.mrc Opened J5055_class_31_00358_volume.mrc as #32, grid size 72,72,72, pixel 5.19, shown at level 2.32, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_32_00358_volume.mrc Opened J5055_class_32_00358_volume.mrc as #33, grid size 72,72,72, pixel 5.19, shown at level 2.35, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_33_00358_volume.mrc Opened J5055_class_33_00358_volume.mrc as #34, grid size 72,72,72, pixel 5.19, shown at level 2.25, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_34_00358_volume.mrc Opened J5055_class_34_00358_volume.mrc as #35, grid size 72,72,72, pixel 5.19, shown at level 2.24, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_35_00358_volume.mrc Opened J5055_class_35_00358_volume.mrc as #36, grid size 72,72,72, pixel 5.19, shown at level 2.28, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_36_00358_volume.mrc Opened J5055_class_36_00358_volume.mrc as #37, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_37_00358_volume.mrc Opened J5055_class_37_00358_volume.mrc as #38, grid size 72,72,72, pixel 5.19, shown at level 2.17, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_38_00358_volume.mrc Opened J5055_class_38_00358_volume.mrc as #39, grid size 72,72,72, pixel 5.19, shown at level 2.35, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_39_00358_volume.mrc Opened J5055_class_39_00358_volume.mrc as #40, grid size 72,72,72, pixel 5.19, shown at level 2.29, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_40_00358_volume.mrc Opened J5055_class_40_00358_volume.mrc as #41, grid size 72,72,72, pixel 5.19, shown at level 2.37, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_41_00358_volume.mrc Opened J5055_class_41_00358_volume.mrc as #42, grid size 72,72,72, pixel 5.19, shown at level 2.16, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_42_00358_volume.mrc Opened J5055_class_42_00358_volume.mrc as #43, grid size 72,72,72, pixel 5.19, shown at level 2.29, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_43_00358_volume.mrc Opened J5055_class_43_00358_volume.mrc as #44, grid size 72,72,72, pixel 5.19, shown at level 2.19, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_44_00358_volume.mrc Opened J5055_class_44_00358_volume.mrc as #45, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_45_00358_volume.mrc Opened J5055_class_45_00358_volume.mrc as #46, grid size 72,72,72, pixel 5.19, shown at level 2.38, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_46_00358_volume.mrc Opened J5055_class_46_00358_volume.mrc as #47, grid size 72,72,72, pixel 5.19, shown at level 2.29, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_47_00358_volume.mrc Opened J5055_class_47_00358_volume.mrc as #48, grid size 72,72,72, pixel 5.19, shown at level 2.37, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_48_00358_volume.mrc Opened J5055_class_48_00358_volume.mrc as #49, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_49_00358_volume.mrc Opened J5055_class_49_00358_volume.mrc as #50, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_50_00358_volume.mrc Opened J5055_class_50_00358_volume.mrc as #51, grid size 72,72,72, pixel 5.19, shown at level 2.3, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_51_00358_volume.mrc Opened J5055_class_51_00358_volume.mrc as #52, grid size 72,72,72, pixel 5.19, shown at level 2.42, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_52_00358_volume.mrc Opened J5055_class_52_00358_volume.mrc as #53, grid size 72,72,72, pixel 5.19, shown at level 2.47, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_53_00358_volume.mrc Opened J5055_class_53_00358_volume.mrc as #54, grid size 72,72,72, pixel 5.19, shown at level 2.4, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_54_00358_volume.mrc Opened J5055_class_54_00358_volume.mrc as #55, grid size 72,72,72, pixel 5.19, shown at level 2.4, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_55_00358_volume.mrc Opened J5055_class_55_00358_volume.mrc as #56, grid size 72,72,72, pixel 5.19, shown at level 2.24, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_56_00358_volume.mrc Opened J5055_class_56_00358_volume.mrc as #57, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_57_00358_volume.mrc Opened J5055_class_57_00358_volume.mrc as #58, grid size 72,72,72, pixel 5.19, shown at level 2.42, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_58_00358_volume.mrc Opened J5055_class_58_00358_volume.mrc as #59, grid size 72,72,72, pixel 5.19, shown at level 2.38, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_59_00358_volume.mrc Opened J5055_class_59_00358_volume.mrc as #60, grid size 72,72,72, pixel 5.19, shown at level 2.28, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_60_00358_volume.mrc Opened J5055_class_60_00358_volume.mrc as #61, grid size 72,72,72, pixel 5.19, shown at level 2.42, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_61_00358_volume.mrc Opened J5055_class_61_00358_volume.mrc as #62, grid size 72,72,72, pixel 5.19, shown at level 2.43, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_62_00358_volume.mrc Opened J5055_class_62_00358_volume.mrc as #63, grid size 72,72,72, pixel 5.19, shown at level 2.34, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_63_00358_volume.mrc Opened J5055_class_63_00358_volume.mrc as #64, grid size 72,72,72, pixel 5.19, shown at level 2.42, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_64_00358_volume.mrc Opened J5055_class_64_00358_volume.mrc as #65, grid size 72,72,72, pixel 5.19, shown at level 2.37, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_65_00358_volume.mrc Opened J5055_class_65_00358_volume.mrc as #66, grid size 72,72,72, pixel 5.19, shown at level 2.35, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_66_00358_volume.mrc Opened J5055_class_66_00358_volume.mrc as #67, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_67_00358_volume.mrc Opened J5055_class_67_00358_volume.mrc as #68, grid size 72,72,72, pixel 5.19, shown at level 2.23, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_68_00358_volume.mrc Opened J5055_class_68_00358_volume.mrc as #69, grid size 72,72,72, pixel 5.19, shown at level 2.36, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_69_00358_volume.mrc Opened J5055_class_69_00358_volume.mrc as #70, grid size 72,72,72, pixel 5.19, shown at level 2.45, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_70_00358_volume.mrc Opened J5055_class_70_00358_volume.mrc as #71, grid size 72,72,72, pixel 5.19, shown at level 2.4, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_71_00358_volume.mrc Opened J5055_class_71_00358_volume.mrc as #72, grid size 72,72,72, pixel 5.19, shown at level 1.81, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_72_00358_volume.mrc Opened J5055_class_72_00358_volume.mrc as #73, grid size 72,72,72, pixel 5.19, shown at level 2.41, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_73_00358_volume.mrc Opened J5055_class_73_00358_volume.mrc as #74, grid size 72,72,72, pixel 5.19, shown at level 2.25, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_74_00358_volume.mrc Opened J5055_class_74_00358_volume.mrc as #75, grid size 72,72,72, pixel 5.19, shown at level 2.4, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_75_00358_volume.mrc Opened J5055_class_75_00358_volume.mrc as #76, grid size 72,72,72, pixel 5.19, shown at level 2.24, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_76_00358_volume.mrc Opened J5055_class_76_00358_volume.mrc as #77, grid size 72,72,72, pixel 5.19, shown at level 2.37, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_77_00358_volume.mrc Opened J5055_class_77_00358_volume.mrc as #78, grid size 72,72,72, pixel 5.19, shown at level 2.25, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_78_00358_volume.mrc Opened J5055_class_78_00358_volume.mrc as #79, grid size 72,72,72, pixel 5.19, shown at level 2.27, step 1, values float32 > open > /Users/oc2188/Downloads/cryosparc_P1_J5055_00358_volume_series/J5055_class_79_00358_volume.mrc Opened J5055_class_79_00358_volume.mrc as #80, grid size 72,72,72, pixel 5.19, shown at level 2.22, step 1, values float32 > volume #* level 1.3 > tool show Models > hide #!2-80 target m > symclip 10 > select clear > show #!2 target m > hide #!1 target m > show #!3 target m > hide #!2 target m > show #!4 target m > hide #!3 target m > show #!5 target m > hide #!4 target m > show #!6 target m > hide #!5 target m > show #!5 target m > hide #!6 target m > show #!4 target m > hide #!5 target m > show #!3 target m > hide #!4 target m > show #!2 target m > hide #!3 target m > show #!1 target m > hide #!2 target m > show #!80 target m > hide #!1 target m > show #!79 target m > hide #!80 target m > show #!80 target m > hide #!79 target m > show #!1 target m > hide #!80 target m > volume #* level 1.1 > show #!2 target m > hide #!1 target m > show #!3 target m > hide #!2 target m > show #!4 target m > hide #!3 target m > show #!5 target m > hide #!4 target m > show #!6 target m > hide #!5 target m > show #!7 target m > hide #!6 target m > show #!8 target m > hide #!7 target m > show #!9 target m > hide #!8 target m > show #!10 target m > hide #!9 target m > show #!11 target m > hide #!10 target m > show #!12 target m > hide #!11 target m > show #!13 target m > hide #!12 target m > show #!14 target m > hide #!13 target m > show #!15 target m > hide #!14 target m > show #!16 target m > hide #!15 target m > volume #* level 10.5 > volume #* level 0.5 > show #!17 target m > hide #!16 target m > show #!18 target m > hide #!17 target m > show #!19 target m > hide #!18 target m > show #!20 target m > hide #!19 target m > show #!21 target m > hide #!20 target m > show #!22 target m > hide #!21 target m > show #!23 target m > hide #!22 target m > show #!24 target m > hide #!23 target m > show #!25 target m > hide #!24 target m > show #!26 target m > hide #!25 target m > show #!27 target m > hide #!26 target m > show #!28 target m > hide #!27 target m > show #!29 target m > hide #!28 target m > show #!30 target m > hide #!29 target m > show #!31 target m > hide #!30 target m Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/model_panel/tool.py"", line 420, in _seq_key_press self._next_model() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/model_panel/tool.py"", line 399, in _next_model self._show_next_model(1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/model_panel/tool.py"", line 425, in _show_next_model cur_shown = [m for m in self.models ^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/model_panel/tool.py"", line 426, in if m.display and m in self.skip_models and not self.skip_models[m]] ^^^^^^^^^ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/drawing.py"", line 389, in get_display return self._any_displayed_positions and len(self._positions) > 0 ^^^^^^^^^^^^^^^^^^^^ TypeError: object of type 'NoneType' has no len() TypeError: object of type 'NoneType' has no len() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/drawing.py"", line 389, in get_display return self._any_displayed_positions and len(self._positions) > 0 ^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. OpenGL version: 4.1 Metal - 88 OpenGL renderer: Apple M2 Max OpenGL vendor: Apple Python: 3.11.2 Locale: UTF-8 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,5 Model Number: Z17J00171LL/A Chip: Apple M2 Max Total Number of Cores: 12 (8 performance and 4 efficiency) Memory: 64 GB System Firmware Version: 10151.61.4 OS Loader Version: 10151.61.4 Software: System Software Overview: System Version: macOS 14.2.1 (23C71) Kernel Version: Darwin 23.2.0 Time since boot: 8 hours, 12 minutes Graphics/Displays: Apple M2 Max: Chipset Model: Apple M2 Max Type: GPU Bus: Built-In Total Number of Cores: 30 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.4.1 Babel: 2.14.0 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 blosc2: 2.0.0 build: 0.10.0 certifi: 2022.12.7 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.14 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.4.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.52 ChimeraX-AtomicLibrary: 12.1.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.11 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.3.2 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.5 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8.dev202401040148 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.1 ChimeraX-PDB: 2.7.3 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.2.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.1 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.2 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.14.2 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.33.5 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.3.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.3 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.1 contourpy: 1.2.0 cxservices: 1.2.2 cycler: 0.12.1 Cython: 0.29.33 debugpy: 1.8.0 decorator: 5.1.1 docutils: 0.19 executing: 2.0.1 filelock: 3.9.0 fonttools: 4.47.0 funcparserlib: 2.0.0a0 glfw: 2.6.4 grako: 3.16.5 h5py: 3.10.0 html2text: 2020.1.16 idna: 3.6 ihm: 0.38 imagecodecs: 2023.9.18 imagesize: 1.4.1 ipykernel: 6.23.2 ipython: 8.14.0 ipython-genutils: 0.2.0 ipywidgets: 8.1.1 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.2.0 jupyter-core: 5.7.0 jupyterlab-widgets: 3.0.9 kiwisolver: 1.4.5 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.3 matplotlib: 3.7.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.8 netCDF4: 1.6.2 networkx: 3.1 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.8 numpy: 1.25.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.9.0 pickleshare: 0.7.5 Pillow: 10.0.1 pip: 23.0 pkginfo: 1.9.6 platformdirs: 4.1.0 prompt-toolkit: 3.0.43 psutil: 5.9.5 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.16.1 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.2801 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 python-dateutil: 2.8.2 pytz: 2023.3.post1 pyzmq: 25.1.2 qtconsole: 5.4.3 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.11.1 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.7 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.5 sphinxcontrib-htmlhelp: 2.0.4 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.6 sphinxcontrib-serializinghtml: 1.1.9 stack-data: 0.6.3 superqt: 0.5.0 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2023.7.18 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4 traitlets: 5.9.0 typing-extensions: 4.9.0 tzdata: 2023.4 urllib3: 2.1.0 wcwidth: 0.2.12 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.9 }}} " defect closed normal Graphics fixed Tom Goddard all ChimeraX