id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
10350	Crash showing menu	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open ""/Users/aileen/Desktop/a3_models_04122023/inactive AR.cxs""

[Repeated 1 time(s)]Log from Mon Dec 4 17:27:47 2023

Window position QRect(1920,-946 1437x178) outside any known screen, using
primary screen  

UCSF ChimeraX version: 1.6 (2023-03-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/aileen/Desktop/a3_models_04122023/receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb

Chain information for
receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb #1  
---  
Chain | Description  
B | No description available  
R | No description available  
  

> open 5uen

5uen title:  
Crystal structure of the human adenosine A1 receptor A1AR-bRIL in complex with
the covalent antagonist DU172 at 3.2A resolution [more info...]  
  
Chain information for 5uen #2  
---  
Chain | Description | UniProt  
A B | Adenosine receptor A1,Soluble cytochrome b562,Adenosine receptor A1 |
AA1R_HUMAN 2-211 228-311, C562_ECOLX 1001-1105  
  
Non-standard residues in 5uen #2  
---  
DU1 —
4-{[3-(8-cyclohexyl-2,6-dioxo-1-propyl-1,2,6,7-tetrahydro-3H-purin-3-yl)propyl]carbamoyl}benzene-1-sulfonyl
fluoride  
OLA — oleic acid  
  

> open &t32

'&t32' has no suffix  

> open 7t32

7t32 title:  
CryoEM structure of the adenosine 2A receptor-BRIL/Anti BRIL Fab complex with
ZM241385 [more info...]  
  
Chain information for 7t32 #3  
---  
Chain | Description | UniProt  
A | Adenosine receptor A2a/Soluble cytochrome b562 Fusion Protein |
AA2AR_HUMAN 8-208 315-398, C562_ECOLX 209-314  
  
Non-standard residues in 7t32 #3  
---  
ZMA —
4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol  
  

> ui tool show Matchmaker

> matchmaker #!2-3 to #1/R pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain R (#1) with 5uen, chain A (#2), sequence alignment score = 765.3  
RMSD between 231 pruned atom pairs is 0.945 angstroms; (across all 266 pairs:
2.990)  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain R (#1) with 7t32, chain A (#3), sequence alignment score = 685  
RMSD between 229 pruned atom pairs is 1.098 angstroms; (across all 268 pairs:
2.460)  
  

> ui mousemode right select

> select #2/B:201

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

354 atoms, 360 bonds, 42 residues, 1 model selected  

> select up

1927 atoms, 1969 bonds, 248 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select #2/B:240

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

390 atoms, 398 bonds, 47 residues, 1 model selected  

> select up

1130 atoms, 1160 bonds, 136 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name=""OLA""

119 atoms, 112 bonds, 7 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> hide atoms

> select ::name=""DU1""::name=""LIG""::name=""ZMA""

96 atoms, 105 bonds, 3 residues, 3 models selected  

> show sel atoms

> color sel byhetero

> color #1 #929292ff

> color sel byhetero

> save ""/Users/aileen/Desktop/a3_models_04122023/inactive AR.cxs""

——— End of log from Mon Dec 4 17:27:47 2023 ———

opened ChimeraX session  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File
""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py"", line 734, in restore  
obj = sm.restore_snapshot(self, data)  
File
""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/tools.py"", line 119, in restore_snapshot  
ti.set_state_from_snapshot(session, data)  
File
""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/log/tool.py"", line 505, in set_state_from_snapshot  
if self.settings.session_restore_clears and session.restore_options['clear
log']:  
KeyError: 'clear log'  
  
opened ChimeraX session  

> open ""/Users/aileen/Desktop/a3_models_04122023/inactive AR.cxs"" format
> session

opened ChimeraX session  

> open 4eiy

4eiy title:  
Crystal structure of the chimeric protein of A2aAR-BRIL in complex with
ZM241385 at 1.8A resolution [more info...]  
  
Chain information for 4eiy #4  
---  
Chain | Description | UniProt  
A | Adenosine receptor A2a/Soluble cytochrome b562 chimera | AA2AR_HUMAN 2-208
219-316, C562_ECOLX 1001-1106  
  
Non-standard residues in 4eiy #4  
---  
CLR — cholesterol  
NA — sodium ion  
OLA — oleic acid  
OLB — (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate  
OLC — (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate (1-Oleoyl-R-glycerol)  
PEG — di(hydroxyethyl)ether  
ZMA —
4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol  
  

> ui tool show Matchmaker

> matchmaker #!2-4 to #1/B pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain B (#1) with 5uen, chain A (#2), sequence alignment score = 525.9  
RMSD between 84 pruned atom pairs is 1.035 angstroms; (across all 87 pairs:
1.189)  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain B (#1) with 7t32, chain A (#3), sequence alignment score = 543.9  
RMSD between 96 pruned atom pairs is 0.772 angstroms; (across all 98 pairs:
0.841)  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain B (#1) with 4eiy, chain A (#4), sequence alignment score = 552.9  
RMSD between 96 pruned atom pairs is 0.698 angstroms; (across all 99 pairs:
0.789)  
  

> select ::name=""CLR""

84 atoms, 93 bonds, 3 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name=""OLA""

231 atoms, 215 bonds, 16 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name=""OLB""

18 atoms, 17 bonds, 1 residue, 1 model selected  

> delete atoms sel

> delete bonds sel

> select ::name=""OLC""

108 atoms, 102 bonds, 6 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> transparency 90 cartoons

> undo

Undo failed, probably because structures have been modified.  

> transparency 0 cartoons

> dssp

> hide #!4 models

> hide #!3 models

> hide #!2 models

> select ::name=""CYS""

269 atoms, 234 bonds, 45 residues, 4 models selected  

> show (#!1 & sel) target ab

> color (#!1 & sel) byhetero

> show #!2 models

> show #!3 models

> show #!4 models

> select ::name=""CYS""

269 atoms, 234 bonds, 45 residues, 4 models selected  

> show sel target ab

> color sel byhetero

> hide #!3 models

> hide #!4 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!4 models

> ui tool show Matchmaker

> matchmaker #!2-4 to #1/R pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain R (#1) with 5uen, chain A (#2), sequence alignment score = 765.3  
RMSD between 231 pruned atom pairs is 0.945 angstroms; (across all 266 pairs:
2.990)  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain R (#1) with 7t32, chain A (#3), sequence alignment score = 685  
RMSD between 229 pruned atom pairs is 1.098 angstroms; (across all 268 pairs:
2.460)  
  
Matchmaker receptor_bril_only_real_space_refined_178_toReceptorFilterMap.pdb,
chain R (#1) with 4eiy, chain A (#4), sequence alignment score = 716  
RMSD between 224 pruned atom pairs is 1.029 angstroms; (across all 269 pairs:
2.408)  
  

> show #!3 models

> show #!1 models

> hide #!3 models

> hide #!2 models

> hide #!1 models

> show #!2 models

> show #!1 models

> hide #!4 models

> hide #!2 models

> show #!2 models

> show #!4 models

> hide #!4 models

> show #!4 models

> select ::name=""HOH""

177 atoms, 177 residues, 1 model selected  


===== Log before crash end =====

Log:
Window position QRect(1920,-946 1437x178) outside any known screen, using
primary screen  

UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-5.1.35
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,1
      Processor Name: 8-Core Intel Core i9
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 256 KB
      L3 Cache: 16 MB
      Hyper-Threading Technology: Enabled
      Memory: 32 GB
      System Firmware Version: 2020.41.1.0.0 (iBridge: 21.16.1069.0.0,0)
      OS Loader Version: 580~743

Software:

    System Software Overview:

      System Version: macOS 14.1.1 (23B81)
      Kernel Version: Darwin 23.1.0
      Time since boot: 16 days, 6 hours, 11 minutes

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0002
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3

    AMD Radeon Pro 5500M:

      Chipset Model: AMD Radeon Pro 5500M
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 8 GB
      Vendor: AMD (0x1002)
      Device ID: 0x7340
      Revision ID: 0x0040
      ROM Revision: 113-D3220E-190
      VBIOS Version: 113-D32206U1-020
      Option ROM Version: 113-D32206U1-020
      EFI Driver Version: 01.A1.190
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 3072 x 1920 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL P2414H:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 9T3PC42L159L
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 7.55


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

}}}
"	defect	closed	normal		Window Toolkit		can't reproduce		Tom Goddard				all	ChimeraX