id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1032 attempting VR jlopez99@… Tom Goddard "{{{ Hey all, I'm trying to get Chimera X running on the VR system here at UCSC. I'm using Steam and using a HTC Vive headset. The current problem I'm having is that Chimera X won't split a model, it always says that its one model. Below is the log that I just copy pasted over. Sorry. :/ Any help would be appreciated. (Seeing the spliceosome up close and personal was AWESOME!) -Jessie UCSF ChimeraX version: 0.5 (2018-02-13) OpenGL version: 3.3.0 NVIDIA 388.16 OpenGL renderer: Quadro M2000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation How to cite UCSF ChimeraX open 2v1n format mmcif fromDatabase pdb Summary of feedback from opening 2v1n fetched from pdb notes Used PDBx fixed column width tables to speed up reading mmCIF file Used PDBx keywords to speed up reading mmCIF file Chain information for 2v1n #1.12 Chain Description 1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A protein kin homolog 2v1n citation: Carlier, L., Le Maire, A., Gondry, M., Guilhaudis, L., Milazzo, I., Davoust, D., Couprie, J., Gilquin, B., Zinn-Justin, S. (2007). Solution Structure of the Region 51-160 of Human Kin17 Reveals an Atypical Winged Helix Domain. Protein Sci., 16, 2750. PMID: 18029424. DOI: 10.1110/PS.073079107 Opened mmCIF data containing 22848 atoms and 23124 bonds vr on device vr true started SteamVR rendering An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\updateloop.py"", line 61, in draw_new_frame view.draw(check_for_changes = False) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\graphics\view.py"", line 184, in draw r.draw_background() File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\graphics\opengl.py"", line 708, in draw_background GL.glClear(flags) File ""zr\accelerate\src\errorchecker.pyx"", line 53, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError (src\errorchecker.c:1270) OpenGL.error.GLError: GLError( err = 1282, description = b'invalid operation', baseOperation = glClear, cArguments = (16640,) ) graphics reset Expected a keyword vr on device vr true Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 205, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2590, in run _used_aliases=used_aliases, log=log)) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 3073, in __call__ return self.cmd.run(text, _used_aliases=_used_aliases, log=log) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2569, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 75, in vr wait_for_vsync(session, mirror) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' AttributeError: 'Session' object has no attribute 'log' AttributeError: 'Session' object has no attribute 'log' File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. split Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Did not split 2v1n, has only one piece Cannot launch 'mailto:chimerax-bugs@cgl.ucsf.edu': There is no mail program installed. toolshed show ""Model Panel"" graphics reset Expected a keyword vr on device vr true Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 205, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2590, in run _used_aliases=used_aliases, log=log)) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 3073, in __call__ return self.cmd.run(text, _used_aliases=_used_aliases, log=log) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2569, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 75, in vr wait_for_vsync(session, mirror) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' AttributeError: 'Session' object has no attribute 'log' AttributeError: 'Session' object has no attribute 'log' File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. device vr Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 205, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2569, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 75, in vr wait_for_vsync(session, mirror) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' AttributeError: 'Session' object has no attribute 'log' AttributeError: 'Session' object has no attribute 'log' File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. vr off device vr false Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 205, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2590, in run _used_aliases=used_aliases, log=log)) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 3073, in __call__ return self.cmd.run(text, _used_aliases=_used_aliases, log=log) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2569, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 57, in vr stop_vr(session) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 140, in stop_vr wait_for_vsync(session, True) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' AttributeError: 'Session' object has no attribute 'log' AttributeError: 'Session' object has no attribute 'log' File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. vr on device vr true Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 205, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2590, in run _used_aliases=used_aliases, log=log)) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 3073, in __call__ return self.cmd.run(text, _used_aliases=_used_aliases, log=log) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2569, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 75, in vr wait_for_vsync(session, mirror) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' AttributeError: 'Session' object has no attribute 'log' AttributeError: 'Session' object has no attribute 'log' File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\vive\vr.py"", line 149, in wait_for_vsync session.log.warning('Mirror may cause VR stutter.' See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. Cannot launch 'mailto:chimerax-bugs@cgl.ucsf.edu': There is no mail program installed. toolshed show Log sequence chain #1.4/A Alignment identifier is 1.4.A -. .-. .-. .-. .-. .-. . ||*\*|||*\* /|||*\*|||*\* /|||*\*|||*\* /| |/ *\*|||*\*|||/ *\*|||*\*|||/ *\*|||*\*|| ~ `-~ `-` `-~ `-` `-~ `- *Jessie MNG Lopez* PhD Student, Molecular, Cell and Developmental Biology *Zahler Laboratory* The Center for Molecular Biology of RNA University of California, Santa Cruz Sinsheimer 419 (831) 459-5127 *jlopez99@ucsc.edu * }}} " defect closed normal VR not a bug all ChimeraX