id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
10174	Session restore DICOM error	phil.cruz@…	Zach Pearson	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.7rc202311160224 (2023-11-16 02:24:54 UTC)
Description
I get this error when opening a save session file that has VR segmentations. The session tries to load with VR on, but I get the error and VR starts up but doesn't launch properly.

Log:
UCSF ChimeraX version: 1.7rc202311160224 (2023-11-16)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open C:\Users\BioViz7\Desktop\segmentation\seg2_multi.cxs format session

Opened 4 CT (No Description) as #1.1.1, grid size 512,512,236, pixel
0.576,0.576,1.24, shown at step 1, values int16  

restore_snapshot for ""DICOMVolume"" returned None  

restore_snapshot for ""VolumeImage"" returned None  

restore_snapshot for ""VolumeSurface"" returned None  

Opened segmentation 1 as #3, grid size 512,512,236, pixel 0.576,0.576,1.24,
shown at step 1, values uint8  
Opened segmentation 2 as #4, grid size 512,512,236, pixel 0.576,0.576,1.24,
shown at level 0.501, step 1, values uint8  
Log from Thu Nov 16 13:40:19 2023

> vr button grip hand left command next

UCSF ChimeraX version: 1.7rc202311160224 (2023-11-16)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\BioViz7\Downloads\4-24533 format dicom

Summary of feedback from opening C:\Users\BioViz7\Downloads\4-24533  
---  
note | Opened 4 CT (No Description) as #1.1.1, grid size 512,512,236, pixel
0.576,0.576,1.24, shown at step 1, values int16  
  

> volume #1.1.1 level -393.8,0 level -228.4,0.9077 level -50.92,0 level
> -136.9,0.9385 level -300.5,0.9231 level -1024,0

> volume #1.1.1 region 0,0,0,511,511,235 step 2

[Repeated 1 time(s)]

> ui tool show Segmentations

> dicom view fourup

> dicom view default

> vr true

started SteamVR rendering  

> vr button B ""erase segmentations"" hand right

> vr button A ""create segmentations"" hand right

> vr button thumbstick ""resize segmentation cursor"" hand right

> vr button grip ""move segmentation cursor"" hand right

> volume #1.1.1

> volume #1.1.1 style image

VR mode windowing  

> volume #1.1.1 level -204.2,0 level -37.95,0.9077 level 140.5,0 level
> 54.04,0.9385 level -110.4,0.9231 level -1024,0

> volume #1.1.1 level -359.8,0 level -196.4,0.9077 level -20.97,0 level
> -105.9,0.9385 level -267.6,0.9231 level -1024,0

> volume #1.1.1 level -268.6,0 level -105,0.9077 level 70.55,0 level
> -14.5,0.9385 level -176.3,0.9231 level -1024,0

> volume #1.1.1 level -8.871,0 level 156.1,0.9077 level 333.2,0 level
> 247.4,0.9385 level 84.21,0.9231 level -1024,0

> volume #1.1.1 level -94.98,0 level 70.74,0.9077 level 248.6,0 level
> 162.4,0.9385 level -1.5,0.9231 level -1024,0

Opened segmentation 1 as #3, grid size 512,512,236, pixel 0.576,0.576,1.24,
shown at level 0.0002, step 2, values uint8  

> volume #1.1.1 level 42.43,0 level 208.2,0.9077 level 386.1,0 level
> 299.9,0.9385 level 135.9,0.9231 level -1024,0

> volume #1.1.1 level 54.67,0 level 220.7,0.9077 level 398.8,0 level
> 312.5,0.9385 level 148.3,0.9231 level -1024,0

> volume #1.1.1 level -84.51,0 level 82.65,0.9077 level 262,0 level
> 175.1,0.9385 level 9.787,0.9231 level -1024,0

> hide #!1.1 models

> show #!1.1 models

> volume #1.1.1 level -161,0 level 11.55,0.9077 level 196.7,0 level 107,0.9385
> level -63.68,0.9231 level -1024,0

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> volume #1.1.1 level -112.2,0 level 61.46,0.9077 level 247.7,0 level
> 157.5,0.9385 level -14.22,0.9231 level -1024,0

> volume #1.1.1 level -159.8,0 level 14.49,0.9077 level 201.5,0 level
> 110.9,0.9385 level -61.48,0.9231 level -1024,0

> volume #1.1.1 level -351.6,0 level -176.8,0.9077 level 10.89,0 level
> -80.01,0.9385 level -253,0.9231 level -1024,0

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> volume #1.1.1 level -188.1,0 level -11.71,0.9077 level 177.5,0 level
> 85.85,0.9385 level -88.59,0.9231 level -1024,0

> volume #1.1.1 level -114.7,0 level 62.14,0.9077 level 251.9,0 level
> 160,0.9385 level -14.96,0.9231 level -1024,0

> volume #1.1.1 level -97.02,0 level 80.16,0.9077 level 270.3,0 level
> 178.2,0.9385 level 2.921,0.9231 level -1024,0

> volume #1.1.1 level 15.76,0 level 192.7,0.9077 level 382.5,0 level
> 290.5,0.9385 level 115.5,0.9231 level -1024,0

> volume #1.1.1 level -108.8,0 level 68.54,0.9077 level 258.8,0 level
> 166.6,0.9385 level -8.769,0.9231 level -1024,0

> volume #1.1.1 level -215.6,0 level -38.26,0.9077 level 152.1,0 level
> 59.86,0.9385 level -115.6,0.9231 level -1024,0

> volume #1.1.1 level -478.3,0 level -309.4,0.9077 level -128.2,0 level
> -216,0.9385 level -383,0.9231 level -1024,0

> volume #1.1.1 level -605.5,0 level -436.3,0.9077 level -254.7,0 level
> -342.7,0.9385 level -510.1,0.9231 level -1024,0

> volume #1.1.1 level -557.7,0 level -387.1,0.9077 level -204.1,0 level
> -292.8,0.9385 level -461.5,0.9231 level -1024,0

> volume #1.1.1 level -498,0 level -327.1,0.9077 level -143.7,0 level
> -232.6,0.9385 level -401.6,0.9231 level -1024,0

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> volume #1.1.1 level -255.6,0 level -84.39,0.9077 level 99.3,0 level
> 10.31,0.9385 level -159,0.9231 level -1024,0

> volume #1.1.1 level -29.18,0 level 142.4,0.9077 level 326.5,0 level
> 237.3,0.9385 level 67.61,0.9231 level -1024,0

> volume #1.1.1 level -128.7,0 level 43.55,0.9077 level 228.3,0 level
> 138.8,0.9385 level -31.51,0.9231 level -1024,0

> show #!3 models

> hide #!3 models

> volume #1.1.1 level -226.2,0 level 68.11,0.9077 level 384,0 level
> 230.9,0.9385 level -60.2,0.9231 level -1024,0

> volume #1.1.1 level -380.3,0 level 73.76,0.9077 level 560.9,0 level
> 324.9,0.9385 level -124.2,0.9231 level -1024,0

> volume #1.1.1 level -242.3,0 level 91.18,0.9077 level 449,0 level
> 275.6,0.9385 level -54.17,0.9231 level -1024,0

> volume #1.1.1 level -171.6,0 level 93.67,0.9077 level 378.3,0 level
> 240.4,0.9385 level -21.97,0.9231 level -1024,0

> volume #1.1.1 level -120.2,0 level 91.29,0.9077 level 318.2,0 level
> 208.3,0.9385 level -0.8886,0.9231 level -1024,0

> volume #1.1.1 level -111.2,0 level 70.22,0.9077 level 264.9,0 level
> 170.6,0.9385 level -8.858,0.9231 level -1024,0

> volume #1.1.1 level -98.2,0 level 48.45,0.9077 level 205.8,0 level
> 129.6,0.9385 level -15.48,0.9231 level -1024,0

> volume #1.1.1 level -90.38,0 level 23.03,0.9077 level 144.7,0 level
> 85.77,0.9385 level -26.4,0.9231 level -1024,0

> volume #1.1.1 level -51.96,0 level 62.06,0.9077 level 184.4,0 level
> 125.1,0.9385 level 12.36,0.9231 level -1024,0

> volume #1.1.1 level -33.54,0 level 72.19,0.9077 level 185.6,0 level
> 130.7,0.9385 level 26.1,0.9231 level -1024,0

> volume #1.1.1 level -16.97,0 level 72.77,0.9077 level 169.1,0 level
> 122.4,0.9385 level 33.65,0.9231 level -1024,0

> volume #1.1.1 level -40.83,0 level 73.98,0.9077 level 197.2,0 level
> 137.5,0.9385 level 23.93,0.9231 level -1024,0

> volume #1.1.1 level -78.72,0 level 75.91,0.9077 level 241.8,0 level
> 161.5,0.9385 level 8.507,0.9231 level -1024,0

> volume #1.1.1 level -131.9,0 level 65.16,0.9077 level 276.6,0 level
> 174.2,0.9385 level -20.72,0.9231 level -1024,0

> volume #1.1.1 level -384.4,0 level -187.5,0.9077 level 23.72,0 level
> -78.62,0.9385 level -273.4,0.9231 level -1024,0

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

Opened segmentation 2 as #4, grid size 512,512,236, pixel 0.576,0.576,1.24,
shown at level 0.0002, step 2, values uint8  

> hide #!3 models

> volume #1.1.1 level -232.3,0 level -34.47,0.9077 level 177.9,0 level
> 75,0.9385 level -120.7,0.9231 level -1024,0

> show #!3 models

> hide #!3 models

> show #!3 models

> volume #1.1.1 level -217.7,0 level -20.89,0.9077 level 190.2,0 level
> 87.95,0.9385 level -106.7,0.9231 level -1024,0

> hide #!3 models

> volume #1.1.1 level -219.3,0 level -18.22,0.9077 level 197.5,0 level
> 93.01,0.9385 level -105.9,0.9231 level -1024,0

> volume #1.1.1 level -237.5,0 level 0.5302,0.9077 level 255.9,0 level
> 132.2,0.9385 level -103.2,0.9231 level -1024,0

> volume #1.1.1 level -228.7,0 level -0.793,0.9077 level 243.8,0 level
> 125.3,0.9385 level -100.2,0.9231 level -1024,0

> volume #1.1.1 level -324.7,0 level -4.176,0.9077 level 339.8,0 level
> 173.2,0.9385 level -143.9,0.9231 level -1024,0

> volume #1.1.1 level -445.1,0 level -8.416,0.9077 level 460.2,0 level
> 233.2,0.9385 level -198.8,0.9231 level -1024,0

> volume #1.1.1 level -633.5,0 level -36.97,0.9077 level 603.1,0 level
> 293,0.9385 level -297,0.9231 level -1024,0

> volume #1.1.1 level -509.6,0 level -37.04,0.9077 level 470,0 level
> 224.4,0.9385 level -243,0.9231 level -1024,0

> volume #1.1.1 level -395.5,0 level -33.02,0.9077 level 355.9,0 level
> 167.5,0.9385 level -191,0.9231 level -1024,0

> volume #1.1.1 level -306.2,0 level -29.87,0.9077 level 266.6,0 level
> 123,0.9385 level -150.3,0.9231 level -1024,0

> volume #1.1.1 level -237.8,0 level -34.15,0.9077 level 184.4,0 level
> 78.51,0.9385 level -122.9,0.9231 level -1024,0

> volume #1.1.1 level -189.8,0 level -32.46,0.9077 level 136.4,0 level
> 54.6,0.9385 level -101.1,0.9231 level -1024,0

> volume #1.1.1 level -155.5,0 level -31.25,0.9077 level 102,0 level
> 37.46,0.9385 level -85.4,0.9231 level -1024,0

> volume #1.1.1 level -65.85,0 level 47.24,0.9077 level 168.6,0 level
> 109.8,0.9385 level -2.056,0.9231 level -1024,0

> volume #1.1.1 level -103.8,0 level 9.817,0.9077 level 131.8,0 level
> 72.68,0.9385 level -39.72,0.9231 level -1024,0

> volume #1.1.1 level -105.6,0 level 5.962,0.9077 level 125.6,0 level
> 67.66,0.9385 level -42.65,0.9231 level -1024,0

> volume #1.1.1 level -137.1,0 level 4.852,0.9077 level 157.2,0 level
> 83.38,0.9385 level -57.02,0.9231 level -1024,0

> volume #1.1.1 level -133.5,0 level 4.978,0.9077 level 153.6,0 level
> 81.58,0.9385 level -55.38,0.9231 level -1024,0

> volume #1.1.1 level -99.16,0 level 6.188,0.9077 level 119.2,0 level
> 64.46,0.9385 level -39.73,0.9231 level -1024,0

> volume #1.1.1 level -101.8,0 level 2.195,0.9077 level 113.8,0 level
> 59.72,0.9385 level -43.14,0.9231 level -1024,0

> volume #1.1.1 level -105.7,0 level 4.722,0.9077 level 123.2,0 level
> 65.8,0.9385 level -43.41,0.9231 level -1024,0

> volume #3 style image

> volume #3

> volume #1.1.1 level -74.33,0 level 36.3,0.9077 level 155,0 level
> 97.51,0.9385 level -11.92,0.9231 level -1024,0

> volume #3 level 0.006906,0 level 0.1071,0.8 level 1.009,1

> hide #!3 models

> show #!3 models

> volume #1.1.1 level -80.61,0 level 29.93,0.9077 level 148.5,0 level
> 91.07,0.9385 level -18.26,0.9231 level -1024,0

> volume #3 level 0.005774,0 level 0.1059,0.8 level 1.007,1

> volume #1.1.1 level -37.85,0 level 72.83,0.9077 level 191.6,0 level
> 134.1,0.9385 level 24.58,0.9231 level -1024,0

> volume #3 level 0.01584,0 level 0.1161,0.8 level 1.018,1

> volume #1.1.1 level 24.68,0 level 135.4,0.9077 level 254.1,0 level
> 196.6,0.9385 level 87.11,0.9231 level -1024,0

> volume #3 level 0.03149,0 level 0.1317,0.8 level 1.034,1

> volume #1.1.1 level 24.66,0 level 135.4,0.9077 level 254.1,0 level
> 196.6,0.9385 level 87.1,0.9231 level -1024,0

> volume #3 level 0.03142,0 level 0.1317,0.8 level 1.034,1

> volume #3 step 2

> volume #1.1.1 level 24.48,0 level 137.1,0.9077 level 258,0 level
> 199.4,0.9385 level 88.02,0.9231 level -1024,0

> volume #3 level 0.02308,0 level 0.1251,0.8 level 1.043,1

> volume #3 step 1

> volume #1.1.1 level -17.46,0 level 95.12,0.9077 level 215.9,0 level
> 157.4,0.9385 level 46.05,0.9231 level -1024,0

> volume #3 level 0.01282,0 level 0.1148,0.8 level 1.032,1

> volume #1.1.1 level 119.3,0 level 234.9,0.9077 level 358.9,0 level
> 298.8,0.9385 level 184.5,0.9231 level -1024,0

> volume #3 level 0.03439,0 level 0.139,0.8 level 1.081,1

> volume #1.1.1 level -54.29,0 level 61.6,0.9077 level 185.9,0 level
> 125.7,0.9385 level 11.08,0.9231 level -1024,0

> volume #3 level -0.0105,0 level 0.09446,0.8 level 1.039,1

> volume #1.1.1 level 156.5,0 level 272.9,0.9077 level 397.8,0 level
> 337.3,0.9385 level 222.1,0.9231 level -1024,0

> volume #3 level 0.04006,0 level 0.1455,0.8 level 1.094,1

> volume #1.1.1 level 302.2,0 level 418.8,0.9077 level 543.8,0 level
> 483.2,0.9385 level 367.9,0.9231 level -1024,0

> volume #3 level 0.07591,0 level 0.1815,0.8 level 1.131,1

> save C:/Users/BioViz7/Desktop/segmentation/seg2_multi.cxs

——— End of log from Thu Nov 16 13:40:19 2023 ———

started SteamVR rendering  
opened ChimeraX session  
Traceback (most recent call last):  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\core\triggerset.py"", line 149, in invoke  
return self._func(self._name, data)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\vive\vr.py"", line 809, in _next_frame  
self.process_controller_events()  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\vive\vr.py"", line 838, in process_controller_events  
self.process_controller_motion()  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\vive\vr.py"", line 882, in process_controller_motion  
hc.process_motion()  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\vive\vr.py"", line 2798, in process_motion  
m.drag(HandMotionEvent(self, m._button_down, previous_pose, pose))  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\vive\vr.py"", line 3575, in drag  
if m.vr_motion(e) != 'accumulate drag':  
^^^^^^^^^^^^^^  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\dicom\ui\segmentation_mouse_mode.py"", line 239, in vr_motion  
c = self.segmentation_tool.segmentation_sphere.scene_position.origin()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
AttributeError: 'NoneType' object has no attribute 'segmentation_sphere'  
  
Error processing trigger ""new frame"":  
AttributeError: 'NoneType' object has no attribute 'segmentation_sphere'  
  
File ""C:\Program Files\ChimeraX_rc2\bin\Lib\site-
packages\chimerax\dicom\ui\segmentation_mouse_mode.py"", line 239, in vr_motion  
c = self.segmentation_tool.segmentation_sphere.scene_position.origin()  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  

> vr false

> vr true

started SteamVR rendering  

QWindowsWindow::setGeometry: Unable to set geometry 2487x648-49+58 (frame:
2511x712-61+6) on QWidgetWindow/""QDockWidgetClassWindow"" on ""\\\\.\DISPLAY1"".
Resulting geometry: 2479x623-45+79 (frame: 2503x687-57+27) margins: 12, 52,
12, 12 minimum size: 600x321 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=917526, y=917566), mintrack=POINT(x=1074, y=626)))  

QWindowsWindow::setGeometry: Unable to set geometry 1413x324+2460+698 (frame:
1429x363+2452+667) on QWidgetWindow/""QDockWidgetClassWindow"" on
""\\\\.\DISPLAY2"". Resulting geometry: 1421x349+2456+677 (frame:
1437x388+2448+646) margins: 8, 31, 8, 8 minimum size: 600x321 maximum size:
524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=616, y=360)))  

QWindowsWindow::setGeometry: Unable to set geometry 2487x648-21+68 (frame:
2511x712-33+16) on QWidgetWindow/""QDockWidgetClassWindow"" on ""\\\\.\DISPLAY1"".
Resulting geometry: 2479x623-17+89 (frame: 2503x687-29+37) margins: 12, 52,
12, 12 minimum size: 600x321 maximum size: 524287x524287
MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0),
maxtrack=POINT(x=917526, y=917566), mintrack=POINT(x=1074, y=626)))  




OpenGL version: 3.3.0 NVIDIA 471.41
OpenGL renderer: NVIDIA GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.2
Locale: en_US.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: Notebook                        
Model: P870KM_KM1                     
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 34,306,633,728
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700K CPU @ 4.20GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.4.1
    Babel: 2.13.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2023.7.22
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.12
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.1
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7rc202311160224
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.1
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.12
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.2
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.2
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.0
    comtypes: 1.1.14
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.44.3
    funcparserlib: 1.0.1
    glfw: 2.6.2
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.5.0
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.8
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.7
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 23.2
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 10.0.1
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.0.0
    prompt-toolkit: 3.0.41
    psutil: 5.9.5
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pywin32: 305
    pyzmq: 25.1.1
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.7
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.5
    sphinxcontrib-htmlhelp: 2.0.4
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.6
    sphinxcontrib-serializinghtml: 1.1.9
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.3
    traitlets: 5.9.0
    typing-extensions: 4.8.0
    tzdata: 2023.3
    urllib3: 2.1.0
    wcwidth: 0.2.10
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9
    WMI: 1.5.1

}}}
"	defect	closed	normal		Sessions		fixed		Tom Goddard				all	ChimeraX