id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 10123 Problem reading XYZ file: invalid literal for int() with base 10 giuso@… Tony Schaefer "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19045 ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC) Description Opened an xyz file Log: UCSF ChimeraX version: 1.5 (2022-11-24) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""P:\\__Work\\_others\TTY Si Zr > Hf\\_SiNHC\TTY122Me_VAC_TD-S1_opt_EDDM.cub"" format cube Opened TTY122Me_VAC_TD-S1_opt_EDDM.cub as #1, grid size 113,94,89, pixel 0.176, shown at level -0.000636,0.000636, step 1, values float32 > open ""P:/__Work/_others/TTY Si Zr Hf/_SiNHC/TTY122Me_VAC_TD-S1_opt_EDDM.xyz"" Traceback (most recent call last): File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 253, in open_xyz n_atoms = int(line) ValueError: invalid literal for int() with base 10: 'TTY122Me TD-S1 C1\n' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\graphics.py"", line 51, in event if self.handle_drag_and_drop(event): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\graphics.py"", line 116, in handle_drag_and_drop mw.dropEvent(event) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 559, in dropEvent _open_dropped_file(self.session, p) File ""C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py"", line 1922, in _open_dropped_file run(session, 'open %s' % FileNameArg.unparse(path)) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 457, in collated_open return remember_data_format() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\\__init__.py"", line 481, in open return open_xyz( File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 311, in open_xyz raise e File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, UnboundLocalError: local variable 'eles' referenced before assignment UnboundLocalError: local variable 'eles' referenced before assignment File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, See log for complete Python traceback. > open ""P:/__Work/_others/TTY Si Zr Hf/_SiNHC/TTY122Me_VAC_TD-S1_opt_EDDM.xyz"" Traceback (most recent call last): File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 253, in open_xyz n_atoms = int(line) ValueError: invalid literal for int() with base 10: 'TTY122Me TD-S1 C1\n' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 162, in _qt_safe run(session, ""open "" + "" "".join([FileNameArg.unparse(p) for p in paths]) + ("""" File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 457, in collated_open return remember_data_format() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\\__init__.py"", line 481, in open return open_xyz( File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 311, in open_xyz raise e File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, UnboundLocalError: local variable 'eles' referenced before assignment UnboundLocalError: local variable 'eles' referenced before assignment File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, See log for complete Python traceback. > open ""P:/__Work/_others/TTY Si Zr Hf/_SiNHC/TTY122Me_VAC_TD-S1_opt_EDDM.xyz"" Traceback (most recent call last): File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 253, in open_xyz n_atoms = int(line) ValueError: invalid literal for int() with base 10: 'TTY122Me TD-S1 C1\n' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 162, in _qt_safe run(session, ""open "" + "" "".join([FileNameArg.unparse(p) for p in paths]) + ("""" File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 457, in collated_open return remember_data_format() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\\__init__.py"", line 481, in open return open_xyz( File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 311, in open_xyz raise e File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, UnboundLocalError: local variable 'eles' referenced before assignment UnboundLocalError: local variable 'eles' referenced before assignment File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, See log for complete Python traceback. > close > close # Expected a models specifier or a keyword > open ""P:\\__Work\\_others\TTY Si Zr > Hf\\_SiNHC\TTY122Me_VAC_TD-S1_opt_EDDM.cub"" format cube Opened TTY122Me_VAC_TD-S1_opt_EDDM.cub as #1, grid size 113,94,89, pixel 0.176, shown at level -0.000636,0.000636, step 1, values float32 > close > open ""P:/__Work/_others/TTY Si Zr Hf/_SiNHC/TTY122Me_VAC_TD-S1_opt_EDDM.xyz"" Traceback (most recent call last): File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 253, in open_xyz n_atoms = int(line) ValueError: invalid literal for int() with base 10: 'TTY122Me TD-S1 C1\n' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 162, in _qt_safe run(session, ""open "" + "" "".join([FileNameArg.unparse(p) for p in paths]) + ("""" File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 457, in collated_open return remember_data_format() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\\__init__.py"", line 481, in open return open_xyz( File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 311, in open_xyz raise e File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, UnboundLocalError: local variable 'eles' referenced before assignment UnboundLocalError: local variable 'eles' referenced before assignment File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, See log for complete Python traceback. > open ""P:\\__Work\\_others\TTY Si Zr > Hf\\_SiNHC\TTY122Me_VAC_TD-S1_opt_EDDM.cub"" format cube Opened TTY122Me_VAC_TD-S1_opt_EDDM.cub as #1, grid size 113,94,89, pixel 0.176, shown at level -0.000636,0.000636, step 1, values float32 > open ""P:/__Work/_others/TTY Si Zr Hf/_SiNHC/TTY122Me_VAC_TD-S1_opt_EDDM.xyz"" Traceback (most recent call last): File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 253, in open_xyz n_atoms = int(line) ValueError: invalid literal for int() with base 10: 'TTY122Me TD-S1 C1\n' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 162, in _qt_safe run(session, ""open "" + "" "".join([FileNameArg.unparse(p) for p in paths]) + ("""" File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 457, in collated_open return remember_data_format() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\\__init__.py"", line 481, in open return open_xyz( File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 311, in open_xyz raise e File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, UnboundLocalError: local variable 'eles' referenced before assignment UnboundLocalError: local variable 'eles' referenced before assignment File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, See log for complete Python traceback. > open ""P:/__Work/_others/TTY Si Zr Hf/_SiNHC/TTY122Me_VAC_TD-S1_opt_EDDM.xyz"" Traceback (most recent call last): File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 253, in open_xyz n_atoms = int(line) ValueError: invalid literal for int() with base 10: 'TTY122Me TD-S1 C1\n' During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 162, in _qt_safe run(session, ""open "" + "" "".join([FileNameArg.unparse(p) for p in paths]) + ("""" File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py"", line 38, in run results = command.run(text, log=log, return_json=return_json) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2897, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 193, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 457, in collated_open return remember_data_format() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 428, in remember_data_format models, status = func(*func_args, **func_kw) File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\\__init__.py"", line 481, in open return open_xyz( File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 311, in open_xyz raise e File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, UnboundLocalError: local variable 'eles' referenced before assignment UnboundLocalError: local variable 'eles' referenced before assignment File ""C:\Users\giuso\AppData\Local\UCSF\ChimeraX\1.5\site- packages\SEQCROW\io.py"", line 259, in open_xyz eles, See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 369.39 OpenGL renderer: Quadro K420/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: en_GB.cp1252 Qt version: PyQt6 6.3.1, Qt 6.3.1 Qt runtime version: 6.3.2 Qt platform: windows Manufacturer: Dell Inc. Model: Precision Tower 3620 OS: Microsoft Windows 10 Professionnel (Build 19045) Memory: 8,476,569,600 MaxProcessMemory: 137,438,953,344 CPU: 4 Intel(R) Core(TM) i5-7500 CPU @ 3.40GHz OSLanguage: fr-FR Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 argcomplete: 3.0.5 asttokens: 2.1.0 attrs: 23.1.0 Babel: 2.11.0 backcall: 0.2.0 basis-set-exchange: 0.9 blockdiag: 3.0.0 build: 0.8.0 certifi: 2022.9.24 cftime: 1.6.2 charset-normalizer: 2.1.1 ChimeraX-AddCharge: 1.4 ChimeraX-AddH: 2.2.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.41.5 ChimeraX-AtomicLibrary: 8.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.7.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.1 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.2 ChimeraX-CommandLine: 1.2.4 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.5 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.3 ChimeraX-DockPrep: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.1 ChimeraX-MatchMaker: 2.0.9 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.8 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.6 ChimeraX-ModelPanel: 1.3.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.1 ChimeraX-MouseModes: 1.1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.9.1 ChimeraX-PDB: 2.6.8 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.7.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.1.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.24.3 ChimeraX-uniprot: 2.2.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.1.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.1 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0.1 colorama: 0.4.5 comtypes: 1.1.10 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.32 debugpy: 1.6.4 decorator: 5.1.1 docutils: 0.19 entrypoints: 0.4 executing: 1.2.0 filelock: 3.7.1 fonttools: 4.38.0 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.33 imagecodecs: 2022.7.31 imagesize: 1.4.1 importlib-metadata: 5.1.0 ipykernel: 6.15.3 ipython: 8.4.0 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.1.2 jsonschema: 4.17.3 jupyter-client: 7.3.4 jupyter-core: 5.1.0 kiwisolver: 1.4.4 line-profiler: 3.5.1 lxml: 4.9.1 lz4: 4.0.2 MarkupSafe: 2.1.1 matplotlib: 3.5.2 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.0 networkx: 2.8.5 numexpr: 2.8.4 numpy: 1.23.1 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pickleshare: 0.7.5 Pillow: 9.2.0 pip: 22.2.2 pkginfo: 1.8.3 platformdirs: 2.5.4 prompt-toolkit: 3.0.33 psutil: 5.9.1 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.12.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.1 PyQt6-Qt6: 6.3.2 PyQt6-sip: 13.4.0 PyQt6-WebEngine-commercial: 6.3.1 PyQt6-WebEngine-Qt6: 6.3.2 pyrsistent: 0.19.3 python-dateutil: 2.8.2 pytz: 2022.6 pywin32: 303 pyzmq: 24.0.1 qtconsole: 5.3.1 QtPy: 2.3.0 RandomWords: 0.4.0 regex: 2023.3.23 requests: 2.28.1 scipy: 1.9.0 Send2Trash: 1.8.0 SEQCROW: 1.6.5 setuptools: 65.1.1 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 5.1.1 sphinx-autodoc-typehints: 1.19.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tifffile: 2022.7.31 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.2 traitlets: 5.3.0 urllib3: 1.26.13 wcwidth: 0.2.5 webcolors: 1.12 wheel: 0.37.1 wheel-filename: 1.4.1 WMI: 1.5.1 zipp: 3.11.0 }}} " defect assigned normal Third Party all ChimeraX