id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1011	atomspec should not include bonds with only one end specified	Elaine Meng	Eric Pettersen	"It may be because my specification has a negation (~):

sel C & ~ @@idatm_type=Car 

... is supposed to select all non-aromatic carbon atoms, which it does, but it also selects bonds between aromatic and non-aromatic carbon atoms.  At first I thought it was an error in atom type, but now I see that the set of atoms selected is actually correct, just an overzealous additional selection of bonds.  To be more specific, the command above selects CB-CG bonds in Phe and Tyr, where the CB is not aromatic but CG is aromatic. Reassign as appropriate."	defect	closed	major		Command Line		fixed		Eric Pettersen Tom Goddard				all	ChimeraX