id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
10049	Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x0000000202aa1240 (most recent call first):
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in 
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code
  File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main


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}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> fetch 1RZ8

Unknown command: fetch 1RZ8  

> open 1RZ8

1rz8 title:  
Crystal structure of human ANTI-hiv-1 GP120-reactive antibody 17B [more
info...]  
  
Chain information for 1rz8 #1  
---  
Chain | Description  
A C | Fab 17b light chain  
B D | Fab 17b heavy chain  
  
1rz8 mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| author_and_software_defined_assembly  
  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /C:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /B:1-213

1712 atoms, 1754 bonds, 228 residues, 1 model selected  

> delete sel

> select /D:1-213

1712 atoms, 1754 bonds, 228 residues, 1 model selected  

> select /C:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /B:1-213

Nothing selected  

> select /D:1-213

1712 atoms, 1754 bonds, 228 residues, 1 model selected  

> select /D:1-213

1712 atoms, 1754 bonds, 228 residues, 1 model selected  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /C:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /C:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /B:1-213

Nothing selected  

> select /D:1-213

1712 atoms, 1754 bonds, 228 residues, 1 model selected  

> select /C:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> select /B:1-213

Nothing selected  

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> undo

> select up

1828 atoms, 1754 bonds, 344 residues, 1 model selected  

> select up

5478 atoms, 5124 bonds, 1130 residues, 1 model selected  

> select up

5478 atoms, 5124 bonds, 1130 residues, 1 model selected  

> select up

5478 atoms, 5124 bonds, 1130 residues, 1 model selected  

> select up

5478 atoms, 5124 bonds, 1130 residues, 1 model selected  

> select up

5478 atoms, 5124 bonds, 1130 residues, 1 model selected  

> select up

5478 atoms, 5124 bonds, 1130 residues, 1 model selected  

> open 1RZ8

1rz8 title:  
Crystal structure of human ANTI-hiv-1 GP120-reactive antibody 17B [more
info...]  
  
Chain information for 1rz8 #2  
---  
Chain | Description  
A C | Fab 17b light chain  
B D | Fab 17b heavy chain  
  
1rz8 mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| author_and_software_defined_assembly  
  

> close #1

> close

> open 1RZ8

1rz8 title:  
Crystal structure of human ANTI-hiv-1 GP120-reactive antibody 17B [more
info...]  
  
Chain information for 1rz8 #1  
---  
Chain | Description  
A C | Fab 17b light chain  
B D | Fab 17b heavy chain  
  
1rz8 mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| author_and_software_defined_assembly  
  

> select /C:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> delete sel

> select /D:1-213

1712 atoms, 1754 bonds, 228 residues, 1 model selected  

> delete sel

> select /A:1-212

1646 atoms, 1685 bonds, 214 residues, 1 model selected  

> color sel orange red

> select /C:1-212

Nothing selected  

> select /B:1-213

1712 atoms, 1754 bonds, 228 residues, 1 model selected  

> color sel cornflower blue

> lighting soft

> select add #1

3832 atoms, 3439 bonds, 916 residues, 1 model selected  

> select subtract #1

Nothing selected  

> set bgColor black

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting soft

> lighting simple

> lighting full

> lighting soft

> lighting full

> lighting simple

> lighting full

> sequence chain #1/A#1/C

Alignment identifier is 1/A  

> sequence chain #1/B#1/D

Alignment identifier is 1/B  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-9

65 atoms, 65 bonds, 9 residues, 1 model selected  

> select /A:9

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /A:9-78

506 atoms, 515 bonds, 70 residues, 1 model selected  

> select /A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /A:1-3

23 atoms, 22 bonds, 3 residues, 1 model selected  

> select /A:1-3

23 atoms, 22 bonds, 3 residues, 1 model selected  

> select /A:1-3,5-70

497 atoms, 505 bonds, 69 residues, 1 model selected  

> select /A:1-3,5-70

497 atoms, 505 bonds, 69 residues, 1 model selected  

> select /A:109

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:107-109

27 atoms, 26 bonds, 3 residues, 1 model selected  

> select /A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /A:1-118

920 atoms, 944 bonds, 120 residues, 1 model selected  

> select /A:1-118

920 atoms, 944 bonds, 120 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:60-61

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /A:60-66

47 atoms, 47 bonds, 7 residues, 1 model selected  

> select /A:60-66

47 atoms, 47 bonds, 7 residues, 1 model selected  

> select /A:60-66

47 atoms, 47 bonds, 7 residues, 1 model selected  

> select /A:55-111

461 atoms, 473 bonds, 59 residues, 1 model selected  

> select /A:193

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /A:193-212

147 atoms, 149 bonds, 20 residues, 1 model selected  

> select /A:183

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /A:183-192

90 atoms, 92 bonds, 10 residues, 1 model selected  

> select /A:79-80

15 atoms, 14 bonds, 2 residues, 1 model selected  

> select /A:79-83

43 atoms, 43 bonds, 5 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-83

609 atoms, 620 bonds, 83 residues, 1 model selected  

> select /A:1-83

609 atoms, 620 bonds, 83 residues, 1 model selected  

> select /A:1-92

689 atoms, 704 bonds, 92 residues, 1 model selected  

> select /A:1-98

766 atoms, 787 bonds, 100 residues, 1 model selected  

> select /A:1-102

790 atoms, 811 bonds, 104 residues, 1 model selected  

> select /A:1-108

846 atoms, 867 bonds, 110 residues, 1 model selected  

> select /A:1-108

846 atoms, 867 bonds, 110 residues, 1 model selected  

> select /A:1-112

870 atoms, 891 bonds, 114 residues, 1 model selected  

> select /B:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /B:1-9

64 atoms, 63 bonds, 9 residues, 1 model selected  

> select /B:1-100J

885 atoms, 904 bonds, 114 residues, 1 model selected  

> select /B:1-103

926 atoms, 948 bonds, 118 residues, 1 model selected  

> select /B:1-111

979 atoms, 1001 bonds, 126 residues, 1 model selected  

> select /B:1-111,113

985 atoms, 1006 bonds, 127 residues, 1 model selected  

> select /B:1-111,113

985 atoms, 1006 bonds, 127 residues, 1 model selected  

> select /B:1-115

1002 atoms, 1024 bonds, 130 residues, 1 model selected  

> select /B:1

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select /B:1-113

991 atoms, 1013 bonds, 128 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-110

860 atoms, 881 bonds, 112 residues, 1 model selected  

> select /A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /A:1-82

598 atoms, 608 bonds, 82 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-58

427 atoms, 434 bonds, 58 residues, 1 model selected  

> select /A:59-60

12 atoms, 12 bonds, 2 residues, 1 model selected  

> select /A:59-62

34 atoms, 35 bonds, 4 residues, 1 model selected  

> select /A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /A:1-111

865 atoms, 886 bonds, 113 residues, 1 model selected  

> select /A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /A:1-110

860 atoms, 881 bonds, 112 residues, 1 model selected  

> show sel surfaces

> hide sel surfaces

> show sel cartoons

> hide #!1 models

> select add #1

3832 atoms, 3439 bonds, 916 residues, 2 models selected  

> show #!1 models

> show sel cartoons

> show sel atoms

> hide sel atoms

> select /A:106

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:106-115

72 atoms, 72 bonds, 10 residues, 1 model selected  

> show sel atoms

> hide sel atoms

> select /A:2

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:2-52

378 atoms, 385 bonds, 51 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-192

1499 atoms, 1534 bonds, 194 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-110

860 atoms, 881 bonds, 112 residues, 1 model selected  

> select /B:1-113

991 atoms, 1013 bonds, 128 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-110

860 atoms, 881 bonds, 112 residues, 1 model selected  

> select /A:1-110

860 atoms, 881 bonds, 112 residues, 1 model selected  

> select /A:111

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /A:111-114

23 atoms, 23 bonds, 4 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-111

865 atoms, 886 bonds, 113 residues, 1 model selected  

> select
> /A:4-5,10-13,19-25,33-38,45-49,53-54,62-67,70-75,84-90,97-98,102-106,114-118,129-139,145-150,153-154,159-163,173-182,191-197,205-210

825 atoms, 825 bonds, 104 residues, 1 model selected  

> select /B:5

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /B:5-100G

829 atoms, 847 bonds, 107 residues, 1 model selected  

> open 4JPV

Summary of feedback from opening 4JPV fetched from pdb  
---  
note | Fetching compressed mmCIF 4jpv from
http://files.rcsb.org/download/4jpv.cif  
  
4jpv title:  
Crystal structure of broadly and potently neutralizing antibody 3bnc117 in
complex with hiv-1 gp120 [more info...]  
  
Chain information for 4jpv #2  
---  
Chain | Description  
G | HIV-1 CLADE A STRAIN 93TH057 GP120 WITH LOOP d AND LOOPD V5 REPLACED FROM
HIV STRAIN 3415V1  
H | HEAVY CHAIN OF ANTIBODY 3BNC117  
L | LIGHT CHAIN OF ANTIBODY 3BNC117  
  
Non-standard residues in 4jpv #2  
---  
EDO — 1,2-ethanediol (ethylene glycol)  
EPE — 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid (HEPES)  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
  

> select #2/G:44-492

2679 atoms, 2743 bonds, 2 pseudobonds, 342 residues, 2 models selected  

> delete sel

> select ::name=""EDO""::name=""EPE""::name=""HOH""::name=""NAG""

740 atoms, 181 bonds, 571 residues, 2 models selected  

> delete sel

> select #2/H:1-213

1676 atoms, 1728 bonds, 1 pseudobond, 216 residues, 2 models selected  

> color (#!2 & sel) cornflower blue

> select #2/L:1-212

1603 atoms, 1639 bonds, 204 residues, 1 model selected  

> color sel orange red

> color sel red

> select add #2

3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 2 models selected  

> lighting full

> lighting simple

> lighting full

> lighting soft

> lighting full

> select subtract #2

Nothing selected  

> select add #2

3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 2 models selected  

> ui mousemode right ""translate selected models""

> view matrix models #2,1,0,0,-18.329,0,1,0,7.4624,0,0,1,97.08

> ui mousemode right ""rotate selected models""

> view matrix models
> #2,0.7368,-0.57017,0.36337,12.837,0.66142,0.71927,-0.21253,-9.0505,-0.14018,0.39693,0.90708,88.408

> view matrix models
> #2,0.72954,-0.67035,0.13568,4.1626,0.68393,0.71374,-0.15107,-6.507,0.0044285,0.20301,0.97917,92.553

> hide sel cartoons

> hide sel surfaces

> hide sel atoms

> show sel atoms

> hide sel atoms

> show sel surfaces

> hide sel surfaces

> show sel cartoons

> sequence chain #2/H

Alignment identifier is 2/H  

> sequence chain #2/L

Alignment identifier is 2/L  

> select #2/H:1

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #2/H:1-113

997 atoms, 1030 bonds, 123 residues, 1 model selected  

> select #2/L:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/L:1-110

817 atoms, 835 bonds, 102 residues, 1 model selected  

> select #2/L:1-112

827 atoms, 845 bonds, 104 residues, 1 model selected  

> view matrix models
> #2,0.78526,-0.61243,0.091109,0.13813,0.61624,0.78733,-0.018893,-0.48478,-0.060162,0.070981,0.99566,96.707

> view matrix models
> #2,0.2182,0.96776,0.12579,-15.529,-0.57288,0.022668,0.81933,72.082,0.79006,-0.25084,0.55936,67.273

> view matrix models
> #2,-0.38919,0.82081,0.4181,11.075,-0.28355,-0.53859,0.79342,75.489,0.87643,0.19024,0.44235,52.787

> view matrix models
> #2,-0.48342,0.80493,0.34408,9.5677,-0.23742,-0.49889,0.83351,75.857,0.84258,0.32124,0.43227,50.66

> ui mousemode right translate

> select #2/L:1-212

1603 atoms, 1639 bonds, 204 residues, 1 model selected  

> color (#!2 & sel) orange red

> select #2/L:7-8

13 atoms, 13 bonds, 2 residues, 1 model selected  

> select #2/L:7-8

13 atoms, 13 bonds, 2 residues, 1 model selected  

> select add #1

3371 atoms, 3452 bonds, 444 residues, 3 models selected  

> select add #2

6637 atoms, 6806 bonds, 1 pseudobond, 862 residues, 5 models selected  

> select subtract #2

3358 atoms, 3439 bonds, 442 residues, 4 models selected  

> ui mousemode right ""translate selected models""

> view matrix models #1,1,0,0,-7.7551,0,1,0,-12.319,0,0,1,-0.29929

> ui mousemode right ""rotate selected models""

> view matrix models
> #1,0.96911,-0.19985,-0.1445,19.759,0.20367,0.97897,0.011995,-15.337,0.13906,-0.041055,0.98943,1.1969

> view matrix models
> #1,0.98863,0.044699,-0.14355,5.2685,-0.029028,0.99357,0.10946,-23.301,0.14751,-0.10405,0.98357,5.3388

> view matrix models
> #1,0.98656,0.050663,-0.15537,6.2266,-0.036863,0.99522,0.090447,-21.238,0.15921,-0.083503,0.98371,3.97

> select subtract #1

1 model selected  

> select add #2

3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 2 models selected  

> view matrix models
> #2,-0.42543,0.83576,0.34715,8.1705,-0.1628,-0.44801,0.87908,75.789,0.89023,0.31748,0.32666,45.015

> view matrix models
> #2,-0.4509,0.82247,0.34674,8.8231,-0.19613,-0.47027,0.86045,75.891,0.87076,0.31997,0.37336,47.469

> ui mousemode right ""translate selected models""

> ui mousemode right ""rotate selected models""

> view matrix models
> #2,-0.44105,0.82766,0.34707,8.5778,-0.18334,-0.46165,0.86791,75.865,0.87856,0.31916,0.35535,46.515

> view matrix models
> #2,-0.46978,0.81237,0.34549,9.2677,-0.22028,-0.48686,0.84525,75.894,0.85486,0.32098,0.40766,49.314

> view matrix models
> #2,-0.44781,0.82411,0.34687,8.7472,-0.19213,-0.46757,0.86283,75.885,0.87324,0.31974,0.36772,47.169

> view matrix models
> #2,-0.31454,-0.94723,-0.061857,17.964,-0.85422,0.25403,0.45362,56.106,-0.41397,0.19552,-0.88905,13.633

> view matrix models
> #2,-0.21523,-0.97413,-0.068842,16.374,-0.87732,0.16192,0.45177,58.005,-0.42893,0.15763,-0.88948,14.525

> view matrix models
> #2,-0.21725,-0.97031,-0.1063,14.613,-0.90283,0.15835,0.39977,56.108,-0.37107,0.18282,-0.91043,12.116

> ui mousemode right ""move picked models""

> view matrix models
> #2,-0.21725,-0.97031,-0.1063,13.176,-0.90283,0.15835,0.39977,53.241,-0.37107,0.18282,-0.91043,13.578

> sequence chain #1/A#1/C

Alignment identifier is 1/A  

> sequence chain #1/B#1/D

Alignment identifier is 1/B  

> select subtract #2

2 models selected  

> select #2/H:1

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #2/H:1-113

997 atoms, 1030 bonds, 123 residues, 1 model selected  

> select #2/L:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #2/L:1-112

827 atoms, 845 bonds, 104 residues, 1 model selected  

> select #2/H:1-113

997 atoms, 1030 bonds, 123 residues, 1 model selected  

> select #2/H:1-113

997 atoms, 1030 bonds, 123 residues, 1 model selected  

> select #2/L:1-112

827 atoms, 845 bonds, 104 residues, 1 model selected  

> select #1/B:1

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #1/B:1-113

991 atoms, 1013 bonds, 128 residues, 1 model selected  

> select #1/A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select #1/A:1-112

870 atoms, 891 bonds, 114 residues, 1 model selected  

> select add #1

3358 atoms, 3439 bonds, 442 residues, 2 models selected  

> select subtract #1

1 model selected  

> ui mousemode right translate

> select #2/H:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select #2/H:1-113

997 atoms, 1030 bonds, 123 residues, 1 model selected  

> select #2/L:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select #2/L:1-112

827 atoms, 845 bonds, 104 residues, 1 model selected  

> select #1/B:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select #1/B:1-113

991 atoms, 1013 bonds, 128 residues, 1 model selected  

> select #1/A:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select #1/A:1-112

870 atoms, 891 bonds, 114 residues, 1 model selected  

> select #2/H:1

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select #2/H:1-113

997 atoms, 1030 bonds, 123 residues, 1 model selected  

> select #2/H:1-116

1015 atoms, 1048 bonds, 126 residues, 1 model selected  

> select #2/L:1-2

16 atoms, 15 bonds, 2 residues, 1 model selected  

> select #2/L:1-112

827 atoms, 845 bonds, 104 residues, 1 model selected  

> select add #2

3279 atoms, 3367 bonds, 1 pseudobond, 420 residues, 3 models selected  

> select subtract #2

2 models selected  

Unsupported scale factor (0.000000) detected on Display1  

> lighting simple

> lighting full

> lighting soft

> lighting simple

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting simple

Unsupported scale factor (0.000000) detected on Display1  

QPainter::begin: Paint device returned engine == 0, type: 3  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 86
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,4
      Model Number: Z15H00106LL/A
      Chip: Unknown
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 32 GB
      System Firmware Version: 10151.1.1
      OS Loader Version: 10151.1.1

Software:

    System Software Overview:

      System Version: macOS 14.0 (23A344)
      Kernel Version: Darwin 23.0.0
      Time since boot: 17 days, 18 hours, 30 minutes

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 24
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        DELL P2719H:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

}}}
"	defect	closed	normal		Window Toolkit		duplicate		Tom Goddard				all	ChimeraX