id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 10002 Crash in QTabBar::paintEvent(QPaintEvent*) chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-13.6-arm64-arm-64bit ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000002076ce080 (most recent call first): File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main {""app_name"":""ChimeraX"",""timestamp"":""2023-10-16 11:14:11.00 +1100"",""app_version"":""1.6.1"",""slice_uuid"":""a5992708-d5b4-36ec-ac0a-e525f6105b56"",""build_version"":""1.6.1.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":1,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 13.6 (22G120)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""4A4B9866-8EA9-4D7D-A47A-037E5F224694""} { ""uptime"" : 160000, ""procRole"" : ""Background"", ""version"" : 2, ""userID"" : 504, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,2"", ""coalitionID"" : 10062, ""osVersion"" : { ""train"" : ""macOS 13.6"", ""build"" : ""22G120"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2023-10-16 11:14:05.4980 +1100"", ""incident"" : ""4A4B9866-8EA9-4D7D-A47A-037E5F224694"", ""pid"" : 69311, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2023-10-13 17:00:44.5975 +1100"", ""procStartAbsTime"" : 3372463233686, ""procExitAbsTime"" : 3951920030880, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.6.1"",""CFBundleVersion"":""1.6.1.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""302B2585-C75D-5312-AAF2-44B21D7F3983"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""ACF13197-89FB-A1BA-066A-5560230EEF60"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 0, ""wakeTime"" : 5, ""sleepWakeUUID"" : ""27FD3018-D3CC-421E-9A23-D8BA71B83288"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x18 is not in any region. 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\n__TEXT 841.6M 755 \ndyld private memory 272K 2 \nmapped file 558.8M 76 \nshared memory 3264K 31 \n=========== ======= ======= \nTOTAL 4.8G 4784 \nTOTAL, minus reserved VM space 3.7G 4784 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""4eb0923a5ef3d52621a2e58de6d06f7803d8ad93"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : { }, ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""63582c5f8a53461413999550"", ""factorPackIds"" : { }, ""deploymentId"" : 240000002 } ], ""experiments"" : [ { ""treatmentId"" : ""6dd670af-0633-45e4-ae5f-122ae4df02be"", ""experimentId"" : ""64406ba83deb637ac8a04419"", ""deploymentId"" : 900000017 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb"" > ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/211_homodimer_c8667_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_000.pdb"" > ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/211_homodimer_c8667_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb"" > ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/211_homodimer_c8667_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_000.pdb"" > ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/211_homodimer_c8667_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_000.pdb"" Chain information for 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb #1 --- Chain | Description A B | No description available Chain information for 211_homodimer_c8667_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_000.pdb #2 --- Chain | Description A B | No description available Chain information for 211_homodimer_c8667_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb #3 --- Chain | Description A B | No description available Chain information for 211_homodimer_c8667_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_000.pdb #4 --- Chain | Description A B | No description available Chain information for 211_homodimer_c8667_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_000.pdb #5 --- Chain | Description A B | No description available > ui tool show Matchmaker > matchmaker #2-5 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_000.pdb, chain A (#2), sequence alignment score = 1085.2 RMSD between 204 pruned atom pairs is 0.336 angstroms; (across all 204 pairs: 0.336) Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb, chain A (#3), sequence alignment score = 1085.2 RMSD between 204 pruned atom pairs is 0.112 angstroms; (across all 204 pairs: 0.112) Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_000.pdb, chain A (#4), sequence alignment score = 1081.6 RMSD between 204 pruned atom pairs is 0.186 angstroms; (across all 204 pairs: 0.186) Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_000.pdb, chain A (#5), sequence alignment score = 1085.2 RMSD between 204 pruned atom pairs is 0.339 angstroms; (across all 204 pairs: 0.339) > matchmaker #2-5 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_000.pdb, chain A (#2), sequence alignment score = 1085.2 RMSD between 204 pruned atom pairs is 0.336 angstroms; (across all 204 pairs: 0.336) Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb, chain A (#3), sequence alignment score = 1085.2 RMSD between 204 pruned atom pairs is 0.112 angstroms; (across all 204 pairs: 0.112) Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_000.pdb, chain A (#4), sequence alignment score = 1081.6 RMSD between 204 pruned atom pairs is 0.186 angstroms; (across all 204 pairs: 0.186) Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 211_homodimer_c8667_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_000.pdb, chain A (#5), sequence alignment score = 1085.2 RMSD between 204 pruned atom pairs is 0.339 angstroms; (across all 204 pairs: 0.339) > color #2 tan > color #3 tan > color #4 tan > color #5 tan > fetch 2TCT Unknown command: fetch 2TCT > fetch 2TCTfetch Unknown command: fetch 2TCTfetch > fetch Unknown command: fetch > fetch Unknown command: fetch > select #1/A#2/A#3/A#4/A#5/A 8085 atoms, 8235 bonds, 1020 residues, 5 models selected > color sel #2effffff > color sel #44e7ffff > color sel #76ff65ff > color sel #4df6ffff > color sel #4cf6ffff > color sel #41f6ffff > color sel #40f6ffff > select clear > save ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/211_homodimer_c8667_env/overlaid homodimers > AF2.cxs"" > open ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/2tct.pdb"" 2tct.pdb title: The complex formed between tet repressor and tetracycline-MG2+ reveals mechanism of antibiotic resistance [more info...] Chain information for 2tct.pdb #6 --- Chain | Description | UniProt A | tetracycline repressor | TETR4_ECOLI 2-208 Non-standard residues in 2tct.pdb #6 --- CTC — 7-chlorotetracycline MG — magnesium ion > ui tool show Matchmaker > matchmaker #2-5 to #6 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 2tct.pdb, chain A (#6) with 211_homodimer_c8667_unrelaxed_rank_002_alphafold2_multimer_v3_model_2_seed_000.pdb, chain A (#2), sequence alignment score = 751 RMSD between 185 pruned atom pairs is 0.751 angstroms; (across all 194 pairs: 1.089) Matchmaker 2tct.pdb, chain A (#6) with 211_homodimer_c8667_unrelaxed_rank_003_alphafold2_multimer_v3_model_5_seed_000.pdb, chain A (#3), sequence alignment score = 751 RMSD between 188 pruned atom pairs is 0.709 angstroms; (across all 194 pairs: 0.973) Matchmaker 2tct.pdb, chain A (#6) with 211_homodimer_c8667_unrelaxed_rank_004_alphafold2_multimer_v3_model_4_seed_000.pdb, chain A (#4), sequence alignment score = 754 RMSD between 188 pruned atom pairs is 0.713 angstroms; (across all 194 pairs: 0.966) Matchmaker 2tct.pdb, chain A (#6) with 211_homodimer_c8667_unrelaxed_rank_005_alphafold2_multimer_v3_model_1_seed_000.pdb, chain A (#5), sequence alignment score = 751 RMSD between 187 pruned atom pairs is 0.739 angstroms; (across all 194 pairs: 1.036) > matchmaker #1 to #6 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 2tct.pdb, chain A (#6) with 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1), sequence alignment score = 751 RMSD between 188 pruned atom pairs is 0.733 angstroms; (across all 194 pairs: 0.998) > matchmaker #1 to #6 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 2tct.pdb, chain A (#6) with 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1), sequence alignment score = 751 RMSD between 188 pruned atom pairs is 0.733 angstroms; (across all 194 pairs: 0.998) > hide #6.2 models > show #6.2 models > hide #6.2 models > hide #6.1 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > open ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/2tct.pdb1"" 2tct.pdb1 title: The complex formed between tet repressor and tetracycline-MG2+ reveals mechanism of antibiotic resistance [more info...] Chain information for 2tct.pdb1 --- Chain | Description 7.1/A | No description available 7.2/A | No description available > ui tool show Matchmaker > matchmaker #!7.1-2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 2tct.pdb1, chain A (#7.1), sequence alignment score = 751 RMSD between 188 pruned atom pairs is 0.733 angstroms; (across all 194 pairs: 0.998) Matchmaker 211_homodimer_c8667_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb, chain A (#1) with 2tct.pdb1, chain A (#7.2), sequence alignment score = 733.2 RMSD between 188 pruned atom pairs is 0.733 angstroms; (across all 194 pairs: 0.998) > hide #!7.2 models > show #!7.2 models > hide #!7.2 models > show #!7.2 models > hide #!7.2 models > hide #!7.1 models > show #!7.1 models > show #!7.2 models > hide #!7.1 models > hide #!7.2 models > hide #!7 models > show #!7 models > close #6-7 > open ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/2tct.pdb"" 2tct.pdb title: The complex formed between tet repressor and tetracycline-MG2+ reveals mechanism of antibiotic resistance [more info...] Chain information for 2tct.pdb #6 --- Chain | Description | UniProt A | tetracycline repressor | TETR4_ECOLI 2-208 Non-standard residues in 2tct.pdb #6 --- CTC — 7-chlorotetracycline MG — magnesium ion > close #6 > open ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/2tct.pdb1"" 2tct.pdb1 title: The complex formed between tet repressor and tetracycline-MG2+ reveals mechanism of antibiotic resistance [more info...] Chain information for 2tct.pdb1 --- Chain | Description 6.1/A | No description available 6.2/A | No description available > hide #1 models > hide #2 models > hide #3 models > hide #4 models > hide #5 models > show #1 models > hide #1 models > show #1 models > hide #1 models > show #1 models > hide #1 models > show #1 models > hide #1 models > show #1 models > show #2 models > show #3 models > show #4 models > hide #!6 models > show #!6 models > show #5 models > hide #5 models > show #5 models > hide #5 models > hide #4 models > hide #3 models > hide #2 models > hide #1 models > show #1 models > show #2 models > show #3 models > show #4 models > show #5 models > ui tool show Matchmaker > save ""/Users/danh/Desktop/Desktop Aug > 2023/paper/211_homodimer_c8667/homodimers alignes with 2TCT.cxs"" > select #1/A#2/A#3/A#4/A#5/A#6.1/A#6.2/A 11569 atoms, 11505 bonds, 9 pseudobonds, 1690 residues, 11 models selected > color (#1-5#!6.1-2 & sel) #d2b48cff > select clear > log metadata #6.1 Metadata for 2tct.pdb1 #6.1 --- Title | The complex formed between tet repressor and tetracycline-MG2+ reveals mechanism of antibiotic resistance Citation | The complex formed between tet repressor andtetracycline-MG2+ reveals mechanism of antibioticresistance. PMID: 7707374 Non-standard residues | CTC — 7-chlorotetracycline MG — magnesium ion Experimental method | X-ray diffraction > log chains #6.1 Chain information for 2tct.pdb1 #6.1 --- Chain | Description A | No description available > log metadata #6.2 No models had metadata > log chains #6.2 Chain information for 2tct.pdb1 #6.2 --- Chain | Description A | No description available > select :CTC 66 atoms, 72 bonds, 2 residues, 2 models selected > select :MG 2 atoms, 2 residues, 2 models selected > select :CTC 66 atoms, 72 bonds, 2 residues, 2 models selected > select :MG 2 atoms, 2 residues, 2 models selected > select :CTC 66 atoms, 72 bonds, 2 residues, 2 models selected > select :MG 2 atoms, 2 residues, 2 models selected > select #6.1/A:2-208 1573 atoms, 1599 bonds, 1 pseudobond, 198 residues, 2 models selected > color (#!6.1 & sel) #3edcdbff > show #!6.2 target m > select #6.2/A:2-208 1573 atoms, 1599 bonds, 1 pseudobond, 198 residues, 2 models selected > color (#!6.2 & sel) #3edcdbff > select clear > select :CTC 66 atoms, 72 bonds, 2 residues, 2 models selected > color sel #23dc35ff > color sel #2bdc29ff > color sel #2bdc2aff > color sel #2bdc2bff > color sel #2cdc2cff > color sel #2ddc2dff > color sel #30dc32ff > color sel #32dc35ff > color sel #36dc3cff > color sel #38dc3fff > color sel #3adc41ff > color sel #3bdc44ff > color sel #3cdc45ff > color sel #3ddc46ff > color sel #3ddc47ff > color sel #3ddc46ff > color sel #3cdc45ff > color sel #3bdc44ff > color sel #3bdc43ff > color sel #3adc42ff > color sel #3adc41ff > color sel #39dc40ff > color sel #38dc3fff > color sel #37dc3eff > color sel #36dc3cff > color sel #34dc39ff > color sel #34dc38ff > color sel #33dc37ff > color sel #32dc35ff > color sel #31dc34ff > color sel #30dc33ff > color sel #2fdc30ff > color sel #2edc30ff > color sel #2edc2fff > color sel #26dc24ff > color sel #26dc25ff > color sel #27dc26ff > hide #6.1.1 models > show #6.1.1 models > hide #6.1.1 models > hide #6.2.1 models > select clear > hide #2 models > hide #3 models > hide #4 models > hide #5 models > show #2 models > show #3 models > show #4 models > show #5 models > ui tool show ""AlphaFold Error Plot"" > ui tool show ViewDockX No suitable models found for ViewDockX > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!6 models QPainter::begin: Paint device returned engine == 0, type: 3 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac14,2 Model Number: Z1610002YX/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 10151.1.1 OS Loader Version: 8422.141.2 Software: System Software Overview: System Version: macOS 13.6 (22G120) Kernel Version: Darwin 22.6.0 Time since boot: 10 days, 43 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: DELL U3419W: Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD) UI Looks like: 3440 x 1440 @ 60.00Hz Main Display: Yes Mirror: On Mirror Status: Master Mirror Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Mirror: On Mirror Status: Hardware Mirror Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX