UCSF ChimeraX version: 0.1 (2017-12-20)
OpenGL version: 4.1 INTEL-10.14.73
OpenGL renderer: Intel(R) Iris(TM) Graphics 6100
OpenGL vendor: Intel Inc.
openÂ 5g52 format mmcif fromDatabase pdb
Summary of feedback from opening 5g52 fetched from pdb		
notes	Used PDBx fixed column width tables to speed up reading mmCIF file
Used PDBx keywords to speed up reading mmCIF file	

Chain information for 5g52 #1		
Chain	Description	
A	No description available	
B	No description available	
C	No description available	

5g52 mmCIF Assemblies		
1	complete icosahedral assembly	
2	icosahedral asymmetric unit	
3	icosahedral pentamer	
4	icosahedral 23 hexamer	
5	icosahedral asymmetric unit, std point frame	

Opened mmCIF data containing 7045 atoms and 7241 bonds
movie record
turnÂ y 2 180
waitÂ 180
movie encodeÂ ~/Desktop/movie1.mp4
/Applications/ChimeraX.app/Contents/bin/ffmpeg -r 25 -i /var/folders/2h/r_flycl50hj8klh8w4t1xmw400030f/T/chimovie_g83b-%05d.ppm -vf crop=floor(in_w/2)*2:floor(in_h/2)*2:0:0 -y -vcodec libx264 -f mp4 -pix_fmt yuv420p -crf 20 /Users/eddimpri/Desktop/movie1.mp4
stdout:

stderr:
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
built with Apple LLVM version 9.0.0 (clang-900.0.38)
configuration: --prefix=/private/var/tmp/chimerax_build/develop/chimerax/build --enable-gpl --enable-version3 --disable-network --disable-doc --disable-devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable-libtheora --enable-libvpx --enable-libx264 --yasmexe=/private/var/tmp/chimerax_build/develop/chimerax/build/bin/yasm --optflags=-O --extra-cflags=-I/private/var/tmp/chimerax_build/develop/chimerax/build/include --extra-ldflags='-O3 -Wall -Wextra -L/private/var/tmp/chimerax_build/develop/chimerax/build/lib' --extra-libs=-ldl
libavutil 55. 34.101 / 55. 34.101
libavcodec 57. 64.101 / 57. 64.101
libavformat 57. 56.101 / 57. 56.101
libavdevice 57. 1.100 / 57. 1.100
libavfilter 6. 65.100 / 6. 65.100
libswscale 4. 2.100 / 4. 2.100
libswresample 2. 3.100 / 2. 3.100
libpostproc 54. 1.100 / 54. 1.100
Input #0, image2, from '/var/folders/2h/r_flycl50hj8klh8w4t1xmw400030f/T/chimovie_g83b-%05d.ppm':
Duration: 00:00:07.20, start: 0.000000, bitrate: N/A
Stream #0:0: Video: ppm, rgb24, 480x394, 25 fps, 25 tbr, 25 tbn, 25 tbc
[libx264 @ 0x7fc550804c00] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2 AVX FMA3 AVX2 LZCNT BMI2
[libx264 @ 0x7fc550804c00] profile High, level 2.1
[libx264 @ 0x7fc550804c00] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=6 lookahead_threads=1 sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0 constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1 weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40 intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0 qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00
Output #0, mp4, to '/Users/eddimpri/Desktop/movie1.mp4':
Metadata:
encoder : Lavf57.56.101
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p, 480x394, q=-1--1, 25 fps, 12800 tbn, 25 tbc
Metadata:
encoder : Lavc57.64.101 libx264
Side data:
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1
Stream mapping:
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))
Press [q] to stop, [?] for help
dyld: lazy symbol binding failed: Symbol not found: _clock_gettime
Referenced from: /Applications/ChimeraX.app/Contents/bin/ffmpeg
Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: _clock_gettime
Referenced from: /Applications/ChimeraX.app/Contents/bin/ffmpeg
Expected in: /usr/lib/libSystem.B.dylib

An error occurred during encoding. See Reply Log for details.

Error during MPEG encoding:
-----------------------------
Exit value: -5
Error message:Â 
stdout:

stderr:
ffmpeg version 3.2.4 Copyright (c) 2000-2017 the FFmpeg developers
built with Apple LLVM version 9.0.0 (clang-900.0.38)
configuration: --prefix=/private/var/tmp/chimerax_build/develop/chimerax/build --enable-gpl --enable-version3 --disable-network --disable-doc --disable-devices --disable-ffplay --disable-ffserver --disable-ffprobe --enable-libtheora --enable-libvpx --enable-libx264 --yasmexe=/private/var/tmp/chimerax_build/develop/chimerax/build/bin/yasm --optflags=-O --extra-cflags=-I/private/var/tmp/chimerax_build/develop/chimerax/build/include --extra-ldflags='-O3 -Wall -Wextra -L/private/var/tmp/chimerax_build/develop/chimerax/build/lib' --extra-libs=-ldl
libavutil 55. 34.101 / 55. 34.101
libavcodec 57. 64.101 / 57. 64.101
libavformat 57. 56.101 / 57. 56.101
libavdevice 57. 1.100 / 57. 1.100
libavfilter 6. 65.100 / 6. 65.100
libswscale 4. 2.100 / 4. 2.100
libswresample 2. 3.100 / 2. 3.100
libpostproc 54. 1.100 / 54. 1.100
Input #0, image2, from '/var/folders/2h/r_flycl50hj8klh8w4t1xmw400030f/T/chimovie_g83b-%05d.ppm':
Duration: 00:00:07.20, start: 0.000000, bitrate: N/A
Stream #0:0: Video: ppm, rgb24, 480x394, 25 fps, 25 tbr, 25 tbn, 25 tbc
[libx264 @ 0x7fc550804c00] using cpu capabilities: MMX2 SSE2Fast SSSE3 SSE4.2 AVX FMA3 AVX2 LZCNT BMI2
[libx264 @ 0x7fc550804c00] profile High, level 2.1
[libx264 @ 0x7fc550804c00] 264 - core 148 - H.264/MPEG-4 AVC codec - Copyleft 2003-2017 - http://www.videolan.org/x264.html - options: cabac=1 ref=3 deblock=1:0:0 analyse=0x3:0x113 me=hex subme=7 psy=1 psy_rd=1.00:0.00 mixed_ref=1 me_range=16 chroma_me=1 trellis=1 8x8dct=1 cqm=0 deadzone=21,11 fast_pskip=1 chroma_qp_offset=-2 threads=6 lookahead_threads=1 sliced_threads=0 nr=0 decimate=1 interlaced=0 bluray_compat=0 constrained_intra=0 bframes=3 b_pyramid=2 b_adapt=1 b_bias=0 direct=1 weightb=1 open_gop=0 weightp=2 keyint=250 keyint_min=25 scenecut=40 intra_refresh=0 rc_lookahead=40 rc=crf mbtree=1 crf=20.0 qcomp=0.60 qpmin=0 qpmax=69 qpstep=4 ip_ratio=1.40 aq=1:1.00
Output #0, mp4, to '/Users/eddimpri/Desktop/movie1.mp4':
Metadata:
encoder : Lavf57.56.101
Stream #0:0: Video: h264 (libx264) ([33][0][0][0] / 0x0021), yuv420p, 480x394, q=-1--1, 25 fps, 12800 tbn, 25 tbc
Metadata:
encoder : Lavc57.64.101 libx264
Side data:
cpb: bitrate max/min/avg: 0/0/0 buffer size: 0 vbv_delay: -1
Stream mapping:
Stream #0:0 -> #0:0 (ppm (native) -> h264 (libx264))
Press [q] to stop, [?] for help
dyld: lazy symbol binding failed: Symbol not found: _clock_gettime
Referenced from: /Applications/ChimeraX.app/Contents/bin/ffmpeg
Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: _clock_gettime
Referenced from: /Applications/ChimeraX.app/Contents/bin/ffmpeg
Expected in: /usr/lib/libSystem.B.dylib

-----------------------------