(Semi-)Automated Manipulations
==============================

.. contents::
    :local:

.. automodule:: chimerax.isolde.manipulations

Peptide_Bond_Flipper
~~~~~~~~~~~~~~~~~~~~
    .. image:: ../../../src/resources/pep-flip-icon.png

    .. autoclass:: Peptide_Bond_Flipper
        :members:

Protein_Register_Shifter
~~~~~~~~~~~~~~~~~~~~~~~~
    .. image:: ../../../src/resources/registershift-icon.png

    .. autoclass:: Protein_Register_Shifter
        :members:

Backrub
~~~~~~~

.. automodule:: chimerax.isolde.refine

    .. automethod:: chimerax.isolde.refine.apply_backrub

    .. autoclass:: Backrub
        :members:
