[Chimera-users] Contact in angstrom

Arthur Pereira da Fonseca arthurpfonseca3k at hotmail.com
Tue May 4 14:12:15 PDT 2021

Hello, I’m trying to measure contacts between a protein and a peptide using Chimera. I have to do this with different angstroms distances, 2, 3 and 4 Å. I'm using the command line:

findclash :.A test :. B overlap -0.4 hbond 0.0 namingStyle simple save

However I don’t know exactly how to modify the overlap to the desired distances.

Which values can I use to measure contacts within 2, 3 and 4 Å.

Thanks in advance,
Arthur Pereira
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