[Chimera-users] Problem with nucleotide objects settings for 1d86

svle at tiscali.it svle at tiscali.it
Tue Mar 16 05:18:41 PDT 2021


Il 15.03.2021 17:35 Elaine Meng ha scritto: 

> Hi
> If you are trying to get a ladder rung that goes across the
base pair, you would have to select both residues in the base pair. E.g.
in this case the base pair is 20.b with 5.a. So you would need something
> command: select :5.a,20.b
> ... and then use the menu like
you did, or another command:
> nuc side ladder sel
> I hope this
> Elaine
> -----
> Elaine C. Meng, Ph.D. 
> UCSF Chimera(X)
> Department of Pharmaceutical Chemistry
> University of
California, San Francisco
>> On Mar 15, 2021, at 5:05 AM,
svle at tiscali.it [1] wrote: Hi, I have a visualization that seems not a
correct one for 1d86 for DT 20.b when using Actions -> Atoms/Bonds ->
nucleotide objects -> settings... . Settings: Show backbone as: Ribbon
Show sides( .... ) as ladder Ladder Options: Ignore non-base H-bonds:
false Shows stubs: false Rung radius: 0.45 Using existing H-bonds: true
In the png file the problem. Where I'm wrong? Thanks Saverio

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