[Chimera-users] Webgl, python script for multiple pdbs
avnamohri4awesome at gmail.com
Tue Jul 6 16:24:37 PDT 2021
Hello Chimera Team
i have been trying to make a script for looping through a set of pdb files
and get WebGL (.html) file as the output.
from chimera import exports
from chimera import runCommand as rc # use 'rc' as shorthand for runCommand
# change to folder with data files
os.chdir("E:/files to work/")
# gather the names of .pdb files in the folder
file_names = [fn for fn in os.listdir(".") if fn.endswith(".pdb")]
# loop through the files, opening, processing, and closing each in turn
for fn in file_names:
rc("open " + fn)
htmlname = fn[:-3] +'.html'
This is the code I have been using in the script , but the output i get is
not working , i have been getting 26kb files instead of 3-5 mb files and it
doesn't show anything when I open it.
can you please help me with the same as i am new to python code
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