[Chimera-users] --nogui gets permission denied when fetching pdb id

Greg Couch gregc at cgl.ucsf.edu
Tue Jul 30 12:42:09 PDT 2019

"permission denied" is usually because you don't have write permission 
for some directory.  Run the "system pwd"  command to see which 
directory chimera is running in.  You also need permission for a 
temporary directory and the download directory. As Eric alluded, the 
directory that is causing the problem should be obvious from the full 
error message.



On 7/30/2019 12:31 PM, Eric Pettersen wrote:
> I wouldn’t be able to say without the actual full error output.
> —Eric
> Eric Pettersen
> UCSF Computer Graphics Lab
>> On Jul 30, 2019, at 12:01 PM, Ryan Harlich <ryanharlich at hotmail.com 
>> <mailto:ryanharlich at hotmail.com>> wrote:
>> Hi Chimera,
>> I am trying to run a script with the –nogui option and run command 
>> “open 1a1x” and I get permission denied. It works with the GUI so I 
>> am not sure why it is not working with –nogui.
>> Best,
>> Ryan Harlich
>> Sent fromMail <https://go.microsoft.com/fwlink/?LinkId=550986>for 
>> Windows 10
>> _______________________________________________
>> Chimera-users mailing list:Chimera-users at cgl.ucsf.edu 
>> <mailto:Chimera-users at cgl.ucsf.edu>
>> Manage 
>> subscription:http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
> _______________________________________________
> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20190730/6482f0f4/attachment.html>

More information about the Chimera-users mailing list