[Chimera-users] moving ligand to receptor by hand

Nail Besli beslinail at gmail.com
Thu Jul 18 13:29:41 PDT 2019

Chimera is not docking software. I agree dock preparation icon is working
in chimera after showing in a docking program as a resource to dock. Would
you recommend a docking program if you figure out my manner?

Kind regards

18 Tem 2019 Per 23:17 tarihinde Elaine Meng <meng at cgl.ucsf.edu> şunu yazdı:

> Hi Nail,
> Chimera is not a docking program.  However, if you mean you just want to
> move the ligand to the receptor by hand, here is some description of how to
> move things and to “freeze” certain models so that they don’t move with the
> mouse.  You have to put the ligand and receptor in two different input PDB
> files so that they are open as two separate models.
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/mouse.html>
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/mouse.html#activedef>
> Still, moving with the mouse may not be easy.
> If you want to do computational ligand-receptor docking with restraints,
> you would need to find a different program (not Chimera).
> If you want to learn Chimera better, you could try some of the tutorials:
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/frametut.html>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> P.S. I changed the Subject line of the message since you are asking about
> a different thing than before.  This is so that other people can easily see
> what the message is about.
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