[Chimera-users] Volumes comparison
beslinail at gmail.com
Tue Jul 9 03:32:19 PDT 2019
measure correlation #0 #1? is it same measure correlation #1 #2? I mean
two proteins structures to match. Is that right?
On Tue, Jul 9, 2019 at 9:17 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:
> Hi Nail,
> There isn’t much else to say. your maps are open as #1 and #2, command:
> measure correlation #1 #2
> … and then look in the Reply Log (menu: Favorites… Reply Log). Or to use
> a dialog, choose menu: Tools… Volume Data… Fit in Map, choose the two maps
> from the two pulldown menus in that dialog, and then click Update.
> The order is important (#1 #2 vs. #2 #1) and the contour level of the
> first map is important because by default the calculation will only use the
> grid points in the first map with values above its display contour level.
> See the manual pages in the links I sent previously for options such as
> using all values even if they are outside the contour surface.
> I hope this helps,
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> > On Jul 9, 2019, at 2:52 AM, Nail Besli <beslinail at gmail.com> wrote:
> > can you give me some details on this manner? I didn't figure out what I
> am gonna do exactly.thanks
> > On Tue, Jul 9, 2019 at 8:50 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:
> > Dear Dmitry,
> > See command “measure correlation”
> > <
> > … or if you are fitting the maps (Fit in Map tool or “fitmap” command)
> it will be reported automatically in the tool dialog and/or Reply Log.
> > <
> > <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/fitmap.html>
> > ..or you can click the “Update” button in the Fit in Map tool to get the
> value without fitting (moving) the map.
> > I hope this helps,
> > ELaine
> > -----
> > Elaine C. Meng, Ph.D.
> > UCSF Chimera(X) team
> > Department of Pharmaceutical Chemistry
> > University of California, San Francisco
> > > On Jul 9, 2019, at 7:34 AM, Dmitry A. Semchonok <semchonok at gmail.com>
> > >
> > > Dear colleagues,
> > > How to compare 2 volumes in Chimera by cross-correlation?
> > > Thank you.
> > > Sincerely,
> > > Dmitry
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