[Chimera-users] Chimera pdb error

김민재 kjh950429 at gmail.com
Wed Oct 3 03:51:38 PDT 2018

Hi! Thanks for all of your help, but I got another problem...
I uploaded a picture of the Chimera error. The HG hydrogen atoms are not
being shown in Chimera. When I extract just the CG and HG pdb lines and
input them, Chimera works fine and can even calculate the surface. But,
when I run it with the pdb file that I have right now, it keeps returning
that error. I thought that maybe Chimera could only calculate the surface
for atoms which are connected, and that the program was looking for
mandatory bond between the atoms. I was wondering if there was a settings
change I could make to fix this, or if there was any other way to go about
straightening things out to calculate the solvent excluded area of this pdb
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