[Chimera-users] Values at Atom Oositions

Elaine Meng meng at cgl.ucsf.edu
Mon Nov 19 11:07:07 PST 2018

Hi Hernando,
Unfortunately there is no command to save attributes directly to file.  

One idea is use the “report all” option of “measure mapValues” to send the values to the Reply Log and then save the Reply Log as described at the bottom of this page:

The “list atoms” command does a similar thing, lists values of an existing attribute in the Reply Log.


> On Nov 19, 2018, at 10:49 AM, Hernando J Sosa <hernando.sosa at einstein.yu.edu> wrote:
> Thanks Elaine, and it would be possible to save the resulting attributes to a file within the script without using the GUI? Something like:
> measure mapValues  map-model  atom-spec  <my_att_name> 
> saveattributes2file <my_att_name> <my_file>
> OR
> measure mapValues  map-model  atom-spec  <outfilename> 
> Thanks again
> Hernando.

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