[Chimera-users] How to write pdb file by script?

Eric Pettersen pett at cgl.ucsf.edu
Tue Oct 24 14:07:22 PDT 2017

Hi Pin,
	You can replace these lines:

from WriteMol2 import writeMol2
writeMol2(models, "10gs_protein_charged.pdb”)


from Midas import write
write(models[0], None, "10gs_protein_charged.pdb”)


	Eric Pettersen
	UCSF Computer Graphics Lab

> On Oct 23, 2017, at 11:58 PM, 陈品 <chenp85 at mail.sysu.edu.cn> wrote:
> Dear developers,
> I use CHIMERA to add charge into protein file from PDB format to mol2 format, i found that the script:
> $ cat prep_protein.py
> import chimera
> from DockPrep import prep
> models = chimera.openModels.list(modelTypes=[chimera.Molecule])
> prep(models)
> from WriteMol2 import writeMol2
> writeMol2(models, "10gs_protein_charged.pdb")
> $ ~/.local/UCSF-Chimera64-1.12rc/bin/chimera  --nogui 10gs_protein.pdb prep_protein.py
> This script works well, but how to write PDB format file. I can not find WriteDPB function. How Can i write the data to PDB format?
> Kind Regards.
> Pin.
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