[Chimera-users] Trouble with Volume surface and active model not aligned

Phan Trieu Truong truongp at uga.edu
Fri Oct 20 08:57:46 PDT 2017


I have been using Chimera to visualize MO orbital on molecules from ORCA calculations. I have been able to visualize the MO orbitals as a surface volume from cube files. However, I just found out that when I try to reorient the molecule with the surface volume, they are no longer aligned. I don't know what I did to cause this. Any help is much appreciated.

Attached is the picture of the molecules before and after I tried to reorient the molecule with the surface volume.

Thank you,

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