[Chimera-users] Morph groups of maps?

Elaine Meng meng at cgl.ucsf.edu
Sat Jan 30 12:23:17 PST 2016

Hi Oliver,
I haven’t tried these things in a situation similar to yours, but some initial ideas are:

(1) use two “vop morph” commands separated by only a semicolon so that (if it is possible to run two map-morphs concurrently), they will start at the same frame

(2) use “perframe” (possibly with “alias”) to specify running “scolor" zone command(s) at each frame

I would try those things one at a time, for example, perframe scolor with a single vop morph.  Even in that case, I’m not sure it will work.  We may be able to come up with better answer or at least a more definite answer of whether it is possible next week.  In the meanwhile, these are just some things to look into.
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jan 30, 2016, at 10:16 AM, Oliver Clarke <olibclarke at gmail.com> wrote:

> Hello,
> In a situation where I have maps for two conformations, and I've extracted out domain specific maps in both cases, is it possible to run morph maps on both groups of maps simultaneously? Or is there any way to apply color zone  to the trajectory generated by morph maps? I would like to generate a morph map movie where the map is colored by domain throughout the morph, and can't figure out how to do so.
> Cheers,
> Oli

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