[Chimera-users] setting solvent density threshold at 2.5 times of the bulk solvent density

Mohan Pradhan mohan.pradhan at ymail.com
Tue Sep 8 01:52:07 PDT 2015

Dear Chimera users,
I am using the Volume Viewer application in Chimera to visualize the solvent density around protein at a threshold value of 2.5 times of the bulk solvent density.
My understanding is that the iso value corresponding to the bulk solvent density is marked by the peak in the plot of the volume viewer. I am then multiplying the iso value of the peak by 2.5Is this the right way of identifying regions in protein that have a solvent density of 2.5 times of the bulk solvent density?
Kindly suggest.
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