[Chimera-users] [chimera-dev] VolumeEraser
goddard at sonic.net
Wed May 6 16:45:51 PDT 2015
Surfnet in Chimera does not produce a volume, only surfaces. It calculates the volume but then computes surfaces and deletes the volume. If you would to measure the enclosed volume of the disconnected pieces produced by surfnet, first make those pieces independently selectable with command
sop split #0
where #0 is the id for the surfnet model (use Favorites / Model Panel to find the correct id number). Then select the piece of interest (ctrl click on it), then get its enclosed volume with command
measure volume sel
To type commands to Chimera use menu Favorites / Command Line.
This question belongs on the chimera-users mailing list, not the chimera-dev list which is for programming issues.
> On May 6, 2015, at 8:18 AM, Alex wrote:
> Dear Sirs,
> I recently started using chimera, please apologise my lack of knowledge.
> In order to erase a surfnet volume I am trying to use the Erase volume module, but it doesn't work. Are the surfnet objects available to be used in VolumeEraser functions? Is there another way to study volume intersections?
> If you know, please point out the article which describes the procedure for this kind of volume calculation.
> Best regards,
> Chimera-dev mailing list
> Chimera-dev at cgl.ucsf.edu <mailto:Chimera-dev at cgl.ucsf.edu>
> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-dev <http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-dev>
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