[Chimera-users] measure a mean intensity of a segmented map

Tom Goddard goddard at sonic.net
Tue Jun 23 11:00:38 PDT 2015

If you used the Chimera Segment Map dialog (volume dialog menu Tools / Segment Map) then you select a segment (ctrl click on it) and use Segment Map menu entry Regions / Mean and SD.  If you segmented the map by some other means and have the pieces as separate maps use volume dialog menu Tools / Measure Mean, SD, RMS.


> On Jun 23, 2015, at 6:42 AM, 李智海  wrote:
> Hi,
> Here I want to evaluate the flexibility of variable domains of a density map. How can I quantify the mean intensity of segmented parts by Chimera? Thanks!
> Best wishes!
> Zhihai Li
> Ph.D student in State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics.
> School of Life Sciences, Xiamen University.
> Xiang'an Road(South), Xiang'an District, Xiamen City,
> Fujian Province, China.
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> Chimera-users at cgl.ucsf.edu
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