[Chimera-users] About MD movie problem
ramadavidgroup at gmail.com
Wed Jul 30 12:00:20 PDT 2014
I completed the simulation of peptide ligand and receptor in gromacs.
I want to make the simulation movie. I am using latest version of chimera.
I also converted the trajectory files into single pdb movie in gromacs.
I did following process:
1. Through tool----> Md movie--
I choose the gromacs option and load the tpr and trr/xtc files.
But the software shows that the memory is not enough.
( Frame 4000 and atoms 8000)
2. For second time I chose the PDB option for Mdvie. I load the PDB &
now I am getting following message :
Residue 4.C not in the first model on line 17718 of Md.pdb file.
I am pasting the few lines of md.pdb starting from line 17718
ATOM 8852 N NH2 C 4 61.241 96.447 51.027 1.00
ATOM 8853 H1 NH2 C 4 61.539 97.208 50.457 1.00
ATOM 8854 H2 NH2 C 4 61.923 95.899 51.517 1.00
Could you please help me in the above problem,
I will be a very thankful to you for your help.
This is very Important movie for my work.
I am looking for reply,
With best Wishes
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