[Chimera-users] Assigning pre-calculated attribute to B-factor column of pdb

Oliver Clarke olibclarke at gmail.com
Tue Aug 26 11:52:04 PDT 2014

Thanks Eric, that works perfectly! Now I use the following alias in my startup file:

alias ^rama2bfac ramachandran assign $1 ; setattr r ramaProb 1.0 :/^ramaProb ; open ~/Dropbox/chimera_startup/b_fac2rama.py

and it does exactly what I want.


On Aug 26, 2014, at 2:39 PM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:

> from chimera import openModels, Molecule
> for m in openModels.list(modelTypes=[Molecule]):
> 	for a in m.atoms:
> 		a.bfactor = a.residue.ramaProb

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