[Chimera-users] Visualization of protein aqueous solution

Eric Pettersen pett at cgl.ucsf.edu
Mon Sep 10 16:48:37 PDT 2012

On Sep 10, 2012, at 2:06 PM, Nikolay Igorovich Rodionov wrote:

> I've tried using add-ion but I haven't had good results.

So what was the problem with the results?  The results seem good to me if I add a specific number of ions (depends on the system; in the attached image:  50).  If you add ions to neutralize the charge you will get a relatively small number clustered around the solute rather than a larger number spaced throughout the solution.


                        Eric Pettersen
                        UCSF Computer Graphics Lab

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