[Chimera-users] APBS interface in Chimera

Baker, Nathan Nathan.Baker at pnnl.gov
Mon Oct 8 19:36:03 PDT 2012

Hi Elaine --

This is great news!  Would you be interested in talking more about this
extension at some point to discuss ways to make the Chimera/APBS user
interface as user-friendly as possible?


Nathan Baker
Pacific Northwest National Laboratory
Tel:  +1-509-375-3997

On 10/8/12 11:34 AM, "Elaine Meng" <meng at cgl.ucsf.edu> wrote:

>Hi Boaz,
>It is brand new, so you have not at all been negligent!   I only
>documented it a few days ago.
>Currently it does not have the option to use a locally installed APBS --
>it uses an APBS web service provided by the National Biomedical
>Computation Resource.
>Elaine C. Meng, Ph.D.
>UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
>Department of Pharmaceutical Chemistry
>University of California, San Francisco
>On Oct 8, 2012, at 9:24 AM, Boaz Shaanan wrote:
>> Hi,
>> Totally due to my negligence I've only just discovered the long sought
>>APBS interface in the daily build (the one I'm using is from 25/9). Well
>>done Chimera and APBS teams!
>> Practical question: I don't see on the APBS pull-down menu where I
>>define the location of the executable (I'm talking about the Windows
>>version right now, soon I'll try the linux version too). Is it clever
>>enough to find it wherever APBS is installed or have I missed something?
>>    Cheers,
>>             Boaz

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