[Chimera-users] MD analysis : get clusters

Benjamin SCHWARZ schwarz.ben at gmail.com
Fri Nov 2 07:46:40 PDT 2012

Hi list,

   I clustered a bunch of structures using the MD clustering tool, I am very happy with the result but I can't find how to download/save the result. 

Is there a way for instance to copy-paste the columns indicating the number of models as well as the index of the representative for each cluster; alternatively, is possible to sort out frames by clusters ?

If there are command shortcuts to manipulate the clustering, I'd be happy to get them, or to get a link to it in the manual. Chimera is really a great tool, but the learning curve appears really steep ;)

Ultimately, I wonder about the type of clustering used here. I suspect a complete linkage but I couldn't find the confirmation in the manual. Any info on that ?

    Thanks a lot for your extremely good work, and the fast answers on this mailing list


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