[Chimera-users] Clustering docking results using "headless" Chimera
Hurt, Darrell (NIH/NIAID) [E]
darrellh at niaid.nih.gov
Tue Jun 26 19:57:23 PDT 2012
I want to use Chimera on a server (or in an automated fashion by command line; "-nogui") to read in a bunch (1000s) of PDB structures (each having an identical number of atoms) and then do clustering using the NMRCLUST code that you've so conveniently adapted.
I found this old thread:
Is this still the preferred method for doing what I'm hoping?
Also, is it possible to do a MatchMaker alignment before the clustering?
Darrell Hurt, Ph.D.
Section Head, Computational Biology
Bioinformatics and Computational Biosciences Branch (BCBB)
31 Center Drive, Room 3B62B, MSC 2135
Bethesda, MD 20892-2135
http://bioinformatics.niaid.nih.gov<http://bioinformatics.niaid.nih.gov/> (Within NIH)
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