[Chimera-users] problem in visualising metal- atoms in simulated

Mahendra B Thapa thapamb at mail.uc.edu
Mon Jul 30 09:21:20 PDT 2012

Dear Chimera Users,

          I converted amber-12 generated rst-file in *netCDF format* [
] to the pdb format [ test_equil_rst.pdb] by using the  cpptraj command of
amber 12. When I loaded it in chimera, the protein structure looks fine but
two calcium atoms that the protein binds  could not be visualised, although
the pdb file-format looks good.
          Let me help in this respect.

Mahendra Thapa
University of Cincinnati
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