[Chimera-users] Regarding Bonding Pattern and all residue

Elaine Meng meng at cgl.ucsf.edu
Mon Jan 30 10:46:25 PST 2012

Dear Vivek,
In general, you could use the FindHBond and Find Clashes/Contacts tools (or their command equivalents).


For example, see this tutorial:

There are several additional tutorials that may be useful for learning how to use Chimera:

Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Jan 30, 2012, at 2:01 AM, Vivek Keshri wrote:

> Dear Sir / Madam, 
> I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB file in Chimera 1.5.3 and want to identify all residue of receptor and ligand which are involved in binding. 
> Waiting for favorable response...
> Yours Sincerely, 
> Vivek Keshri 

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