[Chimera-users] Hbond in CLI + cacheDA

Maciek Wójcikowski maciek at wojcikowski.pl
Thu Jul 28 03:35:18 PDT 2011

Hello everyone,

I'm trying to compute hbonds for quite large molecular database, so i do it
in CLI. I've added cacheDA parameter which speeds up whole process at first
by 10 times, although after time cache is getting bigger and
bigger operations slows down as one can expect, because Chimera is caching
every compound. Is there a way to limit the size of a cache, or even better
to tell chimera to cache only protein donors and acceptors?

Pozdrawiam,  |  Best regards,
Maciek Wójcikowski
maciek at wojcikowski.pl
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