[Chimera-users] add custom residues to rotamer library or for swapaa command
pett at cgl.ucsf.edu
Mon Dec 5 10:58:10 PST 2011
If SwissSideChain doesn't cover your needs I can send you the same
info I sent the SwissSideChain people so they could get their plugin
working. Your rotamers would need to be in Dunbrack format, and then
you would still have to do some work but not too much.
UCSF Computer Graphics Lab
On Dec 5, 2011, at 10:49 AM, Elaine Meng wrote:
> Hi Sabuj,
> There is no user interface way to do that (you'd have to get into
> code)... however, your question is quite timely, as there is a new
> plugin that provides a Rotamers-type interface to hundreds of
> nonstandard residues. It also makes a new command "swapnaa" to
> access these residues via command line.
> This SwissSidechain plugin is provided by the Molecular Modelling
> Group at SIB. Information and download:
> You can browse the SwissSidechain database to see if it includes
> your residue of interest:
> I hope this helps,
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> On Dec 5, 2011, at 10:31 AM, Sabuj Pattanayek wrote:
>> How do I add custom residues so that they're usable with swapaa or
>> rotamer tool?
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
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