[Chimera-users] Molecular surface crash
goddard at cgl.ucsf.edu
Thu Sep 13 15:42:09 PDT 2007
I computed a molecular surface for the PDB file you gave me by
changing the probe radius from 1.4 A to 1.399 A. I set the new probe
radius using the "New Surface" category of the Preferences dialog (menu
Favorites / Preferences). The "New Surface" category was added in
Chimera 1.2430 (July 23, 2007) so you'll need the newest Chimera
snapshot on Linux
or a weekly Chimera build (very latest code) on other platforms (Mac,
New Chimera surface calculation code is still 6 months away.
Markus Voehler wrote:
> I have switched from my SGI to a RHEL 5 machine and see the same
> behavior now on that computer as I have seen on the Mac. Some pdb files
> do not seem to allow me to show the surface plot. This leaves me with no
> option to display the surface for some pdb's. In the past I was just
> doing this work on the SGI, which worked fine. I have tried your
> suggestion about increasing the vdv radius again on the Linux box, but
> it did not help either on this computer. Has there been any resolution
> to the mentioned report 1295?
> I have deposited the pdb online, in case you want to reproduce the
> problem on your cpu. The link is:
> Any help is appreciated.
More information about the Chimera-users