[Chimera-users] error running Antechamber

Eric Pettersen pett at cgl.ucsf.edu
Sat Jun 23 11:44:02 PDT 2007

On Jun 23, 2007, at 11:12 AM, S Datta wrote:

> Thanks a lot Eric. You suggest that I modify the input
> files by putting the cobalt with residues of their
> own. Do you mean as a separate file or in the
> methylcobalamin file that i downloaded from the PDB
> database ? Also one of the ligands to the
> methylcobalamin is a histidine from the protein.

Change it in the same file.  Change the residue name and number, being 
careful to keep the rest of the columns in the same place.  Also make 
sure that the new residue number isn't the same as some other residue.  
The fact that protein histidines are coordinating the metal shouldn't 
be an issue.  Let me know if you run into problems.


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