[Chimera-users] rmsd and display queries

bala bala at igib.res.in
Wed Jun 6 05:25:28 PDT 2007


1) Basically i hav three conformations (only 3 pdb) of the same molecule picked up from three different regions of a simulated trajectory.
I hv to calculte rmsd and superimpose structure. I tried the emsemble match but it seems that it can work on only two conformation. 
Kindly suggest me how i can overcome this.

2) Is it possible to create a substructure (subset) of a molecule and do rmsd calcutn and superimposing only on the substructures for
the conformations i have.

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