[Chimera-users] Little help to write a python script

Tom Goddard goddard at cgl.ucsf.edu
Tue Jun 5 14:13:32 PDT 2007

Hi Eduardo,

  You are right you need a Python script -- there is no command to set 
density map threshold levels.  I've attached a script to make map 
images.  I threw in a bunch of optional lines to add color, smoothing, 
white background, ..., that you can just precede with a "#" character if 
you do not want them.

  There is also a much more complicated script for making images of maps 
that is used for the Virus Particle Explorer web site, producing for 


You can get that script from the Chimera experimental features web 
page.  Look for Virus EM Map Images:


  I will be on vacation until June 6 - 27.  Others on the chimera-users 
list may be able to help you if you have further script questions.


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