The Log tool echoes commands
that have been executed, with any truncations expanded.
It also shows messages and other output information,
potentially including hyperlinks and command-execution links
(for example,
to generate an assembly
or to show the sequence of a chain).
Restoring a session restores
its Log contents as a collapsible section with a disclosure triangle.
See also:
Command History,
ChimeraX browser,
log,
usage,
model information,
measurements
Like other tools, the Log can be opened from the Tools menu
(more...).
Its context menu includes:
- Clear – remove all contents
- Copy Selection
- Executable Command Links
– whether command links should be executable or show help
(saved as a preference)
- Insert Image
– include a thumbnail image of the current display
- Notifications
(settings saved as preferences)
- Errors Shown in Dialog
– whether error messages in the Log
should also generate a separate dialog window
- Raise Log When Logging Occurs
– whether to show the Log
(bring to front if tabbed behind another panel, or reopen if closed)
whenever some action or message adds to its contents
- Warnings Shown in Dialog
– whether warning messages in the Log
should also generate a separate dialog window
- Restoring Session Clears Dialog
– whether to clear the current contents from the Log
before populating it with the contents from a
session that is being restored
(saved as a preference)
- Select All
- Save As... save contents to an HTML file
UCSF Resource for Biocomputing, Visualization, and Informatics /
October 2025