October 27, 2008
Miscellaneous improvements in creating surfaces, controlling surface appearance, measuring surfaces, rendering speed (OpenGl vertex buffer objects, 2x-3x faster). Unified molecular and volume surfaces.
Outputs surface areas of components. Use split components shortcut Sc to make components separately selectable.
Surface 1fav.pdb, category main, probe radius 1.4, vertex density 2 2 connected surface components Total solvent excluded surface area = 7793.01 component areas = 7765.1, 27.9083 Total solvent accessible surface area = 9851.23 component areas = 9851.21, 0.0244145
|MSMS surface.||Second MSMS surface component.||Hide individual triangles with mouse clicks to clean up edge.|
Use gridSpacing argument to improve smoothness.
(1fav, molmap #0,2,3 5 gridSpacing .5, raise volume threshold, colorzone)
Edge-on view of transparent surface patch is more opaque than face-on view.
Multiscale, color, show ribbon, surface transparency, focus, up-down arrow keys.
Can resize with mouse mode (shortcut sz).
Can select through mesh.
Slab thickness mean 361.59, sdev 119.13, min 113.35, max 786.12, samples 4522 Slab thickness mean 213.45, sdev 43.224, min 40.387, max 313.46, samples 4689