|
|
changeAtom
|
changeAtom (
atom,
element,
geometry,
numBonds,
autoClose=True,
name=None,
)
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Exceptions
|
|
|
ParamError( "Atom already has more bonds than requested.\n" "Either delete some bonds or choose a different number" " of requested bonds." )
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|
|
|
placeHelium
|
placeHelium (
resName,
model="scratch",
position=None,
)
place a new helium atom
resName is the name of the new residue that will contain the
helium. (It will be in the het chain.)
model can either be a chimera.Molecule instance or a string.
If the latter, then a new model is created with the string as
its .name attribute.
position can either be a chimera.Point or None. If None, then
the helium is positioned at the center of the view.
|
|
|
setBondLength
|
setBondLength (
bond,
bondLength,
movingSide="smaller side",
status=None,
)
|
|
|
bondLength
|
bondLength (
e1,
geom,
e2,
a2info=None,
knownSingle=True,
)
|
|
|
placeFragment
|
placeFragment (
fragment,
resName,
model="scratch",
position=None,
)
place a Fragment (see Fragment.py)
resName is the name of the new residue that will contain the
fragment. (It will be in the het chain.)
model can either be a chimera.Molecule instance or a string.
If the latter, then a new model is created with the string as
its .name attribute.
position can either be a chimera.Point or None. If None, then
the fragment is positioned at the center of the view.
|
|