[Chimera-users] Feature to remove default bond between hydrogen atoms of water while loading MD trajectory

NARINDER Kaur Harika nkaur1 at student.gsu.edu
Mon Feb 12 12:12:49 PST 2018


Dear Sir/Ma'am,


I hope you are doing good.

I am interested in making MD movie from AMBER trajectory in chimera 1.12 version.

Unfortunately when I load prmtop and mdcrd files in MD movie, it shows default bond between hydrogens of water molecule. I dont want to show this bond while presenting my research at meetings so I would be really grateful if I can get any help regarding removing this unwanted bond in water molecules.

For further clarity I have attached avi movie file of small section of my trajectory.

Thank you very much for your help and support.


With Regards,

Narinder Kaur Harika

Georgia state university
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