[Chimera-users] crystal structure's electron density maps

Hernando J Sosa hernando.sosa at einstein.yu.edu
Fri Feb 9 12:55:09 PST 2018


This works, Thanks Elaine.


Hernando

Hernando Sosa
Dept. of Physiology and Biophysics 
Albert Einstein College of Medicine 
1300 Morris Park Av. 
Bronx NY 10461 
phone (718) 430-3456 
FAX (718) 430-8819 
email hernando.sosa at einstein.yu.edu


-----Original Message-----
From: Elaine Meng [mailto:meng at cgl.ucsf.edu] 
Sent: Friday, February 09, 2018 1:34 PM
To: Hernando J Sosa
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] crystal structure's electron density maps

Hi Hernando,
The short answer is no, but we updated the EDS fetch to use PDBe, so I think you just need to get a newer Chimera (release 1.12 or newer).  Just now I was able to fetch the data used in that tutorial, command

open edsID:2fma

Chimera 1.12 release notes
<http://www.rbvi.ucsf.edu/chimera/docs/relnotes/1.12.html#1.12>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Feb 9, 2018, at 9:32 AM, Hernando J Sosa <hernando.sosa at einstein.yu.edu> wrote:
> 
> Dear UCSF-Chimera, 
> Can  Chimera  calculate electron density maps from  structure factor  files  (or link to an appropriate program)?.    The tutorial (https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/density.html)   suggest fetching the density map from the Electron Density Server, but this server is no longer available. 
> Thanks 
> Hernando




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