[Chimera-users] Query (how to find H-bonds)

Elaine Meng meng at cgl.ucsf.edu
Sat Sep 30 10:28:31 PDT 2017


Dear Dr. Selvaraj,

Probably you just need to display the atoms, command “display” or menu: Actions… Atoms/Bonds… show.

This is just a general part of using Chimera.  I recommend going through the “Getting Started” tutorial to become more familiar with the program:

<http://www.rbvi.ucsf.edu/Outreach/Tutorials/GettingStarted.html>

Good luck,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Sep 30, 2017, at 4:57 AM, Gurudeeban Selvaraj <gurudeeb99 at qq.com> wrote:
> 
> Dear Dr.Elaine,
> 
>           Thanks for the information. It is working now but some of them I could not see hydrogen bonds (Intra). Now I could not see the ligand structure of the docked result in Chimera.
> 
> I have enclosed file and snap shot of my issue. Let me know, what will do?
> 
> <3_8_sol_3.ref.pdb><image.jpg>










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