[Chimera-users] All PDB ca atom pairwise distance

Kyle Morris kylelmorris at berkeley.edu
Tue Oct 31 09:54:27 PDT 2017


Dear chimera dev and users,

Is there a way to calculate (using the GUI, commands or using a python script) the pairwise distances for every single c-alpha atom in a set of loaded PDB coordinates and spit this out to a file for further analysis? There are 142,800 atoms in the current loaded assembly.

Thanks!
Kyle


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