[Chimera-users] rmsd graph

Elaine Meng meng at cgl.ucsf.edu
Thu Nov 2 09:34:54 PDT 2017


Dear Dr. Sefa Celik,
I am guessing you are using the plotting in the MD Movie trajectory viewer.  In that case, “frame” does already represent time.  In your MD trajectory, the first set of coordinates is frame 1, the second set of coordinates is frame 2, …

<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/movie/framemovie.html>
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/movie/movie.html#plotting>

I hope this helps,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Nov 2, 2017, at 4:11 AM, SEFA ÇELİK <scelik at istanbul.edu.tr> wrote:
> Dear Dr.
> I am using Chimera software(windows platform). I tried to get rmsd graph. And I got the result. But, graph's x-axis "frame" and y-axis "rmsd" value. I want the x axis to be the "time".  Briefly, I want to see how the value of rmsd changes with time.
> Can you help with this? Could you explain in detail?
> Best regard
> Dr. Sefa Celik




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